| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1463 |
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| Symbol | |
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| ID | 8225034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1739854 |
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| End bp | 1743210 |
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| Gene Length | 3357 bp |
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| Protein Length | 1118 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644929322 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_003085874 |
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| Protein GI | 255035253 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000390432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0407868 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACC CGAGGGAACA AACCGCATTG GAATTTCTGG CGGGTGGTGG TGAAATGGGA
CGGCGCATAC GGGAATTCGA TTGGTCGGCT ACTGAACTGG GGAGTCCGGG CGGCTGGCCG
CAGAGCCTGA GAACGTGTAT CCGCATCATG CTCAGCTCTA AACAGCCCAT CTGGATAGGA
TGGGGGCCCA ATTTGCTGAA ATTTTACAAC GACGCTTACA TTGATATAGT CCGGGGAAAG
CATCCGCACG CACTCGGTGA CCCGGCATCG GTGGTGTGGA AAGACATCTG GAAAGAGATA
GAACCGATGT TGTCGCGGGC AATGCAGCGC GATGAGGGCA CTTATGTGGA ATCCCGGCTG
CTGATCATGG TCCGAAGCGG TTTTCCCGAG GAAACTTATT ATACATTCTC CTACACACCC
GTGCTGGGCG ACGACGGCCG CCCAGCCGGC ATCATTTGCT ACAACACCGC CGATACCGAA
CGCATTCTCA GCGAGCGCGC GCTCAAAACC ATGCAGCAGC TCGATACGCT GGGCGAAAGG
AAGCGCGAAG GGGAGGTTTT CGCCCAGGTA GGCCGGGCAT TGTCGGCCAA CGTGCTGGAC
TTTCCTTTTG CAGTATTGTA TAAAATCTCC GAGGACGGCG AGCGCGCCGA TCTCGTGGCC
ACTTCGGGCG TGGAGGGAAC GGACAGCCGG CTCGACGCGC AAATCCGGCT ATCGGAAGAT
GCCGGGCGCT ATGTGCATTT CGCCCGCGCC GTGGAGGATA ACAAAGCCAC CGAAGCCCTC
AACCGCGGAC AATGGGAGGA TCTTGCAAGG GGCGGCTGGG ATGTAGCGCC GAAGTATGTG
GCTTACCTGC CCATCCAGTC GGCTAGCCGC AAGTATCCGC TGGCATTGCT CGCGGTGGGA
TTGAACCCCT ACCGAAAGCT GGATGAGGCC TACCGGAACT TCCTGCAACA GATCGCCGAC
CGCATTGCGC TGGGCCTCGG CAATGTGATG GCCTACGAAG AAGAACAGCG GCGGCTGCGT
GCGCTGGAAG AGCTGGACAA GGCCAAGACC TTGTTTTTTA CCAATATCAG CCACGAGTTC
CGCACGCCGC TCATGCTCAT GCTCGGTCCG CTTGAAGAAT TGCTCCGCCT CAATGCGCCC
GAATGGTCGG AAGCGGAAAA AGCCAAAGTG GAAGTGACCC ACCGCAATGC GCTGCGTTTG
CTGAAACTCG TGAATACGCT CCTGGATTTC AGCAGAATGG AAGGCGGCCG CGGCCACGCA
CGGTTTGTGC GGACGGACCT GGCGGCTTAC ACCCAAAACC TGGCTTCCAA TTTCCGTTCG
GTGATCGAAA AGGCGGGTAT GCAGTTCGAG GTGAAGGTGG CCGGGGATGA ATGCGATGCG
TACGTAGACC GGCCGATGTG GGAGAAAGTG GTTTTCAATC TTTTGTCCAA TGCATTCAAA
TATACCCTGG AAGGCACGAT CACACTGGAA CTGAGCGCGG AGGAGAAGGC CGTACGGCTG
GCGGTAAGCG ATACGGGCGT GGGCATTCCC GCGCATGAGC TTCCGCATGT GTTCGAGCGT
TTTCACCGCG TGCAAAACTC GGCCGGGCGT ACCTACGAAG GCACCGGCAT AGGCTTGTCG
CTGATCCGGG AACTGGTGCA TTTGCACGGA GGCGACATTG GCGTGGAGAG CATGGAGGGC
AAAGGCAGTC GCTTCACAGT AACCGTGCCG CTTGGCAACA AGCACCTGGA CGCGTCGCAA
GTGTTCGAAA CAGACCCGGA AATGGCCGAG GCGATCTCCG ATTTTTATAT CAAAGAAGCT
GAAACGCTGC TGGCTGCGGG GCAATTTGCC GCCCGAAGCG ACAAGTCGTG CGACAATGGC
GGCAAAAATT GCGTCCTGAT TGCCGACGAC AATGCCGACA TGCGCCAGCA CATCCAGTCG
CTCTTGGGCA GCGAATACGA TACCTTAACC GCTTCCAATG GCGTGGAAGC CCTCGAAATC
ATCCGGCGGC ACCGGCCGGC GCTCGTGTTG AGCGATGTGA TGATGCCCGA AATGGACGGA
ATTGCATTGT TAAAGGCCGT GAAAAATGAT CCGGTGATCG CCCAAACGCC CATTATCCTG
ATCACCGCCC GGGCAGGAGA GGAGTCGAGG ATCGAGGGGA TCGAGATCGG TGCGGATGAT
TACATTGTAA AGCCGTTTTC GAGCAGGGAG CTCATCGTGC GGGCGCAGGC GCAAATGCGC
ATGTCGAGCG CGCGGAGCAA GATCGAAGCG AGCGAAAAGC AGTTCAGGAC GCTCACGGAA
ACATTACCCC AGCTGGTGTG GATGACCGAC GAAAAAGGCC ATGTGCTTTT CGCTTCGGGG
CGATGGATGG AATATTCGGG TGTGGCGCCG ACAGACGAGC ATTCCTGGCG GCAGATCGTC
CACCCGGACG ACCTTGAAGC CATTTCAGAA AGCTGGGCAT ACAGCCTGGC AACAGGCGCA
GGCTACAAGG CGGAAGTGCG CCTGCGAAGC AAAACCGGCG AATACCGCTG GCATTCCGGC
ATCGGAGAGC CCATTCGCGA CGAAATGGGC AGCATTATCA ACTGGATCGG CGCGTTTTCC
GATTCGCACG ACCAGCGCAT TTTCACGGAG GAACTCGAAC GAAAAGTGGA CCAGCGGACA
CAAGACCTGC TCCATGCCAA CAAAGAACTG GAATCGTTCA ACTACGTGGC CAGCCACGAC
CTTCAGGAGC CGCTGCGCAA GATCCAGACA TTCATTCACC TCATCGAACG CAACGATTTC
GATAGCGACC TTTCGAAGGG TTATTTCAAG AAAATTTACC TCGCATCGCA GCGTATGGGC
GAGCTGATCC AGTCGGTACT GTCGTACAGC CGTCTTTCCG AAAATGGCGA AAACTTGCAA
CTGGTGGATT TGAACAAGGT CATCGACGAC ATTCGCGTGG ATTTCGAGCT GGCGATCGAG
GAAAAGCAGG CGGCGGTGGT GTGCGAAAAC CTGCCCGTGC TCCGCGCCAA TGTGCTGCAA
ATGAACCAGC TGTTTTCCAA TCTTATCAGC AACTCGCTCA AATTCTCGAA CGGAAAGCCC
GAAATCCGGA TCACCGGCCG CCGCGAGGCC GGACGGGACA TCCCGCTTGC CGGTACCGGG
CCGCGCGAAG GCGACTATTA CCACATCACG ATCCGGGACA ACGGGATCGG CTTCGAGCCG
GAGTTTAGTG AGAAGATATT CGCGCTGTTT CAGCGGCTAC ACCGCAGGCA GGAATATGCC
GGAACGGGAA TCGGGCTGAG CATTGTCAAG AAAATCATTG AGCAGCACAA TGGCTACGTT
TCTGCCGAAT CACACCCAGG CGAAGGGGCT GTTTTTCACC TGTGGTTGCC CGCGTAA
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| Protein sequence | MTDPREQTAL EFLAGGGEMG RRIREFDWSA TELGSPGGWP QSLRTCIRIM LSSKQPIWIG
WGPNLLKFYN DAYIDIVRGK HPHALGDPAS VVWKDIWKEI EPMLSRAMQR DEGTYVESRL
LIMVRSGFPE ETYYTFSYTP VLGDDGRPAG IICYNTADTE RILSERALKT MQQLDTLGER
KREGEVFAQV GRALSANVLD FPFAVLYKIS EDGERADLVA TSGVEGTDSR LDAQIRLSED
AGRYVHFARA VEDNKATEAL NRGQWEDLAR GGWDVAPKYV AYLPIQSASR KYPLALLAVG
LNPYRKLDEA YRNFLQQIAD RIALGLGNVM AYEEEQRRLR ALEELDKAKT LFFTNISHEF
RTPLMLMLGP LEELLRLNAP EWSEAEKAKV EVTHRNALRL LKLVNTLLDF SRMEGGRGHA
RFVRTDLAAY TQNLASNFRS VIEKAGMQFE VKVAGDECDA YVDRPMWEKV VFNLLSNAFK
YTLEGTITLE LSAEEKAVRL AVSDTGVGIP AHELPHVFER FHRVQNSAGR TYEGTGIGLS
LIRELVHLHG GDIGVESMEG KGSRFTVTVP LGNKHLDASQ VFETDPEMAE AISDFYIKEA
ETLLAAGQFA ARSDKSCDNG GKNCVLIADD NADMRQHIQS LLGSEYDTLT ASNGVEALEI
IRRHRPALVL SDVMMPEMDG IALLKAVKND PVIAQTPIIL ITARAGEESR IEGIEIGADD
YIVKPFSSRE LIVRAQAQMR MSSARSKIEA SEKQFRTLTE TLPQLVWMTD EKGHVLFASG
RWMEYSGVAP TDEHSWRQIV HPDDLEAISE SWAYSLATGA GYKAEVRLRS KTGEYRWHSG
IGEPIRDEMG SIINWIGAFS DSHDQRIFTE ELERKVDQRT QDLLHANKEL ESFNYVASHD
LQEPLRKIQT FIHLIERNDF DSDLSKGYFK KIYLASQRMG ELIQSVLSYS RLSENGENLQ
LVDLNKVIDD IRVDFELAIE EKQAAVVCEN LPVLRANVLQ MNQLFSNLIS NSLKFSNGKP
EIRITGRREA GRDIPLAGTG PREGDYYHIT IRDNGIGFEP EFSEKIFALF QRLHRRQEYA
GTGIGLSIVK KIIEQHNGYV SAESHPGEGA VFHLWLPA
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