| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1438 |
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| Symbol | |
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| ID | 8225009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1702521 |
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| End bp | 1705520 |
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| Gene Length | 3000 bp |
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| Protein Length | 999 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644929297 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003085849 |
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| Protein GI | 255035228 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.226679 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAC CATTATCCCG CCTGATCCGA GAACTGCACC GCATTTGCCT GCTCGTAGCG
GCGGTGGCCT GTTTCCTGAC CGAAAATGCC CTGGCGCTCG CCGCCGACCG ACAGATCTCC
GGCAAAGTGG TGTCCGCCGA GGACAAAAAC CCGCTGCCCG GCGTGACCAT CATCGTGAAG
GGAAAGAATA CCGTTGGTAC AGCCACTGAT ACCGATGGAA AATTTAAACT GGAAGTGCCC
GAAGGAGCGA CGCTTATCCT CAGCTACATC GGCTACATCA GCCAGGAAGT GCCCGTGGGC
AACCAGAGCG AAGTGAATGT AGAGCTGGCG CCCGATCAGA AACAGTTGCA GGAAGTGGTC
GTGATTGGAT ATGGTACCCA GAAAAAAGGC GACATTACCA GTTCTGTGGC GAGCATCAAG
CGCGAAGATT TCGTTCAGGG AACGGTACGC GATGCGGCCC AGCTCGTGCA GGGCAAAGTG
GCCGGCTTGC GCATTACCAC GCCCAGCGGC TCCCCCACTT CCAACACGCA GATTAATTTG
CGGGGGATTA ATTCCATTGA GGGAACGGCA AACCCGCTCA TCCTGATCGA TGGCATCCCC
GGCGGCCTGA ACACCGTCGC GCCGGAAGAC ATCGAGTCCG TAGATGTGTT GAAGGACGGT
TCAGCGGCGG CCATTTATGG TACCCGGGCA ACGGGCGGCG TGATTTTGAT CACCACCCGC
AAGAACCGCG GCACTTCGCG ATCTACCATC GAGTATTCCA ATTATGTCAA TATCCAATCC
ATCGCGCGTC GCCCCGAGCT GCTTACCGGT GACGATTACC GGCAGAAAAT CAAGGAAGGA
ATCGACTACA CCGACTATGG CGGCAATACC GACTGGCTTT CCGAGATCAT GCAAAAGCCC
GTGAGCCACA ACCATAACCT GACGTTTTTC GGCGGGAACA GTACCACCAA CTTCACTGGC
TCGGTGAATT ACCGCAACTG GGAAGGGATC TTTCTGAGGT CCGGGCAAAA CCGCTTCACC
GGCCGCGCGG ATTTGAACCA TTCGATGTTT AACAACAAAC TGAAAACCAA TTTGCAGCTC
ATCAACCGCA TTACCCGTTC CAACGGTGCG GTGAGCCCGG CTAACGACGA CGCGGCTTAT
GGCTACGCCT ACCGCCAGGC GATCATCCGC AACCCTACTG ATAAAGTAAT CGGCGACAAT
GGTAAATGGC AGGAGCGCGA CGGCTATTTC TACGAAAACC CGGTTTCGTT GCTCAACGAG
TCGAACTTCA ACAGCTCATT CAAAGAAATG CGGATGGCCG GTAGCCTCGA TTACGCGCCG
ATCGACGACC TGAACTTCAA ATTACTGGTT TCCAATGTAC AAAACAGCAA CCTCGAAGGT
GGCTCCACGA CATTCAACCA CACCAGCACG CGCCTGGGTA ACCAGAACGG CACAGCGTTC
CGCAACACCT ATGCCAACAA TGAAAACCTG CTGGAATTGA CCGGAAATTA TTCCAAAACG
ATCGGTAAAC ACCGCTTTTC GGTACTCGGC GGGTATAGCT GGCAGGACGC TACCTATGAG
GCATTTGCAG CCAGCAACTG GGATTTCCCG ACCGATGCCT ACGATTGGAA CAACCTCGGC
GCGGGTGGCG CATTGCAAAA AGGACAGGCA GCGATGAGCA GCACCAAAAA CAAATGGCAG
CTGGCCGGCT TCTTCGGAAG GGTTACTTAC AGCCTGAGCG ACAAGTACTT ATTCATGGCA
AGCGTGCGCC GCGAGGGTTC TTCCCGATTC GGGGTCAATA ACCAATGGGG TACATTCCCG
GCGGCGTCCA TCGGCTGGCG CATCAGCAAG GAAAACTTCA TGGGCGGCCT GGGCGCGGCC
TCGGACATCA AACTCCGCGC GGGGATAGGC GTAACGGGCA CGATCGCGAA TAACCCGTAT
ATGTCGCAGA TCAGCTACAA TTTCGACCGG GCGCAGGGTG CATTCATCGG CGGTAAATGG
GTACCGGGCT TTGTGCCGGC ACGTAACTTC AACCCCGATC TCCGCTGGGA GAAGAAAGAG
GAATACAATG CGGGTGTAGA TTTTGGTTTC CTGAAAAACC GCATCAACGG GTCGATCGAC
TTTTACAGCC GGAAGGTGAA AGACCTTCTC TATAATTTCC CTGTGCCGGT TCCCCCCTAT
CTAACGGGCA GCATGTTTAT CAATGCCGGG GTAATGGAGA ACAAAGGCCT GGAAGTATTG
CTGAACATCG TGCCGATCCA GACCGGCGAT TTCCAGTGGA ACACCGGTTT GACCTACTCT
ACCAACCGCA ACAAGCTCGT GAGCCTCTCG AACGAACAAT TCCAGGCCGC AAACGACTTC
TTCGACGCGG GATATACGGG TGAGCCGATC CAGGTGAGCA CGCACCGCGT GAAAGTGGGC
GAGCCGATCG GCCGGTTCTT CGTATGGAAG AGCGTGGGCG TGGACGACAA GGGCGCGTGG
CTCGTCGAAA ACAAGGAGGG CGAGGTGATC CCCATCGCCG ATGCTACGCC GGAAGACCGC
CAGTATTATG GTAATGGTAT TCCAAAACAC ATTCTGGGCT GGAACAACAA CATCCGCTAC
AAGCAGTTTG ACCTCGCTGT GAACATGCGC GGCGCATTCG GATTTGACAT TCTCAACTTC
CAGAATATGT TTTACGGCAA CCCGCGCAAC AAGGCCTACA ATATGCTCAA AACGGCCTAC
GACCCGATCG ACGGCAAAGT GCTGACCAGC GACCTCGTGT ACGTGTCGCA TTATATCGAA
AAGGGAGATT ACTGGAAGGT CGACAATGTG ACGCTCGGCT ACACGCTGCC TGCCAATACG
ATCAAAGGCC TTAAAAATGC ACGCATTTTC GTGTCGGGCC TTAACCTGGC GACCATTACC
GGCTACACCG GCATCGACCC GGAGGGCGTC AGCTTCACCG GCTTCTCGCC CGGCAGTGAC
TACCGCGACA AGTACCCTAC CACCCGGACA TTCACCGCCG GCCTGAGCGT AACATTCTGA
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| Protein sequence | MKRPLSRLIR ELHRICLLVA AVACFLTENA LALAADRQIS GKVVSAEDKN PLPGVTIIVK
GKNTVGTATD TDGKFKLEVP EGATLILSYI GYISQEVPVG NQSEVNVELA PDQKQLQEVV
VIGYGTQKKG DITSSVASIK REDFVQGTVR DAAQLVQGKV AGLRITTPSG SPTSNTQINL
RGINSIEGTA NPLILIDGIP GGLNTVAPED IESVDVLKDG SAAAIYGTRA TGGVILITTR
KNRGTSRSTI EYSNYVNIQS IARRPELLTG DDYRQKIKEG IDYTDYGGNT DWLSEIMQKP
VSHNHNLTFF GGNSTTNFTG SVNYRNWEGI FLRSGQNRFT GRADLNHSMF NNKLKTNLQL
INRITRSNGA VSPANDDAAY GYAYRQAIIR NPTDKVIGDN GKWQERDGYF YENPVSLLNE
SNFNSSFKEM RMAGSLDYAP IDDLNFKLLV SNVQNSNLEG GSTTFNHTST RLGNQNGTAF
RNTYANNENL LELTGNYSKT IGKHRFSVLG GYSWQDATYE AFAASNWDFP TDAYDWNNLG
AGGALQKGQA AMSSTKNKWQ LAGFFGRVTY SLSDKYLFMA SVRREGSSRF GVNNQWGTFP
AASIGWRISK ENFMGGLGAA SDIKLRAGIG VTGTIANNPY MSQISYNFDR AQGAFIGGKW
VPGFVPARNF NPDLRWEKKE EYNAGVDFGF LKNRINGSID FYSRKVKDLL YNFPVPVPPY
LTGSMFINAG VMENKGLEVL LNIVPIQTGD FQWNTGLTYS TNRNKLVSLS NEQFQAANDF
FDAGYTGEPI QVSTHRVKVG EPIGRFFVWK SVGVDDKGAW LVENKEGEVI PIADATPEDR
QYYGNGIPKH ILGWNNNIRY KQFDLAVNMR GAFGFDILNF QNMFYGNPRN KAYNMLKTAY
DPIDGKVLTS DLVYVSHYIE KGDYWKVDNV TLGYTLPANT IKGLKNARIF VSGLNLATIT
GYTGIDPEGV SFTGFSPGSD YRDKYPTTRT FTAGLSVTF
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