| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1413 |
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| Symbol | |
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| ID | 8224984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1663848 |
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| End bp | 1667345 |
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| Gene Length | 3498 bp |
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| Protein Length | 1165 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644929273 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003085825 |
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| Protein GI | 255035204 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.177661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.496706 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAC GCATTACCAG AAAATTCTGG CTGAAACTTA TGAGGTTTTC AATCACACAG
AGTTTGGTCA TGGCTTTGCT CGCGGGTGTG GCGTATGCGC ACACGAGCAT TGCGCAGGAA
TACCTGAACC GGCGTTTGAC GGTCCAGGCG GAGAACCGCG AGATTAAGCG AGTGCTGGCG
CATATCGAAA AGGAAACGGA CGTACAGTTT GTTTACAGTT CCAATGTCCT AGACGTGTCG
CGGAAAGTCA CTATCAAGGC ACCGAACACG ACTTTGGAAG AAGTGTTGGC GAAGCTGCTC
AAACCTTTGA AAATCAAATA TGAACTATCC GGGAAGAAGA TCATCCTGTC GTCCGGCGAC
TGGCAGGGAA ACGGTAATGG CCTGCTGCTT CCGGAAGATA ATGCACCCGG GCTTTCGCCT
AAAAAGAAAC TGTCGGGCAA GGTAACCGAC GAAAAAGGCG GCGCATTGCC GGGGGTGAAT
ATCATGGTGA AAGGCACCCA GCGCGGCACG ACCACCAATA CCGAAGGCGC CTTCGAGATC
GACTTGGAGG ATGGTGACGG GGCGCTGCTT TTCAGTTTTG TCGGTTATCA ATCCAAAGAG
GTGATCCTGG GAAACCAGAC GAGCCTCGTG GTGTCGCTCG TACCCGAGAG CAAGGCGTTG
GAGGAAGTGG TGGTAACGGC TTTGGGTATA AAAAAAGCGG CCAAAAGCCT CGGGTATGCC
ACCGCCAGCG TGCTTACCGA GGAAATGACC GTGAACCGCA CGGCTAATTT TATGAATGCA
TTGCAGGGGA AAATGGCGGG CGTGAACATT ACTTCGCTCG GCTCCGGGCC GGCCGGAACG
AGCAAGATCC GCATTCGCGG GCAGTCTTCT TTTGGCGGAA ACAACTCGCC GCTGATCGTC
GTGAACGGCG TGCCGATCGA CAACAGCAAC TTCGGTGCAC GCGGCGACGC GGCCGATAAG
GGCTCCAACC GCACTTCCGA CAGCGGCGAC GGGCTGAGCA GCATTAATCC CGACAATATC
GAATCAATGA CCGTGCTCAA AGGTGCCGCG GCATCGGCGC TGTACGGATC GCGCGCGAAA
GACGGCGTGA TTATGATCAC CACCAAAACC CGCGGTGCGG GCGTGGGCAT CGGCATTGAG
TTTAATTCCA ATTTTACCAC CGAAACGCCG CTCGACTATA CCGATTACCA ATATGAATAC
GGCCAGGGCG AAAACGGCAA GCGGCCCACC ACGCCTAACC CGACTTCGGG GCAATGGAGC
TTTGGCGAGC GGTTCGAGCC GGGAATGACC CAGGTGCTTT TCGATGGTGT GGAAGTGCCT
TATGTGCCGC AGCGCAACCA GATCACCGAT TATTACCGCC GTGGGAGTAC TTTTACGAAC
ACGATTACGG TGTCTTCCGG CGGCGAATTC GGCGGTTTCA GCCTGTCGCT GTCCAACCTC
GACAACAAGA CGATCCTGCC GGGCTCGGGT TACCATCGCA AGACGGTGAA CCTGGGTTTT
ACCCAAACTA TGGCCAAAAA GCTGACCGTT TCGGGTAATA TTAATTATTC CAATGAGGAC
CGCAAGAATC CGCCGAACAT TGCCGAACAG GATTACAGTC CGGTGGTGCT GTACAACATG
GCGAACTCAA TGCCGCTCGA TCTGCTGGAA AAATATGCGA ACGACGCCAA TGGAAATGAG
TACGTATGGT CGCGCTTCAC CAACCGAACC AATCCTTATT TCGCATTGAA ACGCTTCGAA
AACGTGGAAA AGGACCGTGT TTTCGGGAAC CTGTCGGTGC GGTACAATTT CACCGACTGG
CTGTATGCGC AGGTGCGGGT AGGGCAGGAC TATTTCTCCC GCGAGCAGGA TTATAACCTG
CCTACCGGGA GCCAGCGCCA GGCCGCAGCC CCTCAGGGCT TTGTGAATGG GCAATATGTG
CAGGATACCC GCTCGGTACG CGAGCTGAAT ACCGATTTCC TGATCTCGGC CAATAAAACG
TTTGGCCGCA TTGGCTTGAA TATCAATGCG GGCGGTAACC AGATGTACCG CAAGCTGAGC
CGCCACAATG TATTCGTCCA GGATTTTTAT GTGCGCGATC TCTACACAAT CGGTAACGGC
CGGCAGCGCG ATGCTACTTA TGAGATTTCC AAACGGCAGG TAAACTCGCT GTACGGCGCG
GCGGAAATTT CCTATAACGA CTTTCTGTTT TTGAACGGTA CGATCCGGAA TGACTGGTTT
TCGACACTTT CAGCGGCGAA CCGGAGCATT ATGTATCCGT CAGTCACAGC CAGTTTCGTT
TTCTCGCAGG CATTTACTGC CTCGCTTCCG GCTTGGATTT CGTTTGGTAA AGTCCGCGTA
GCCTATGCCG AAGTAGGCAG CGACACGGAT GTTCAGCCTT ACGCCAACAA TTTGTTTTAC
AATATCAACC CACAACAATT TCCCAACCCG AACGGCGCCG GCCAGCCACT GGCGACGATC
AACGGCTCCA CGGTGCCTAA TGCGAACCTT CGCCCGATGC GTGTTTCCGA GAAAGAGGTG
GGATTGGAGC TGAAACTGTT TGAAAACAGG CTGGGACTGG ATTTTACGTA TTACGACAAG
CTGTCGTCCG ATCAGATCCT GCAAGCGCAG ACTTCCGACG CGTCAGGCTA TCTCACGCAG
CTGATCAATG TCGGTAAGGG CCGCAACCGG GGCCTGGAAA TGATGGTGAA TGTGTCGCCA
TACCAAACCA AAAACTTTGT CTGGAACCTG AATTTCAATG CGGCGTACAA TGTCACCAAG
ACGCTCGACC TCGGCGGGAA TGTAAGCGAC GCGATGATCA CCGTCGGCAC GGGCGACTTC
ACCGGCGAGC TCAGGCAGGT GGTGGGTAAG CCAATGGGCC AGCTGTTCGG GTTTGGCTAC
CTCCGCGATG AGCAGGGACG GCAGGTATTC GATGCCGGCA ATGGCCGCCC GCTGCGTACA
CCCACGCAAA TCGCGTTCGG AAGTGCATTG CCGAAATGGG TAGGGGGCAT TACCAATAGT
TTTAATTACA AAAACTTCTC TGCCTCGGTG CTGGTCGACT TCAAACTCGG CCATAAGATG
ATCTCGGGCA CAAATCACAA TGCCTGGCGC CACGGGTTGC TCAAAGAAAC GCTGCCTGGC
CGCGCCGAAG GCTTCGTGAT CGGTGATGGC GTGAACCCGA ACGGCGAAGT GAACCAGACA
AAGTCGGTTG TGCAGGCTTA TTACGAAACG GTCCGTTCGC AGAATATCGC GGAGCAGTTT
GTGTACAATG CGGGTTTGTG GCAACTGCGG CAGATCACGT TCGGCTACGA TTTCGCGCGG
TTTTTGCCTA AAAACATTCC GTTTATCAAA GGCGCGCGGC TGAGCATTGT GTCTAACAAC
GTGGCGGTCC TCAAAAAATG GGTACCGACC ATCCACCCCG ATCAGTTCGG TTTCCCGTCC
GACAACCTCA TCGGCCTCGA AGCGACCGGC TTGCCCATTA CCCGCAGCAC GGGTTTCAAC
CTCAACCTGA AATTCTAA
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| Protein sequence | MKKRITRKFW LKLMRFSITQ SLVMALLAGV AYAHTSIAQE YLNRRLTVQA ENREIKRVLA
HIEKETDVQF VYSSNVLDVS RKVTIKAPNT TLEEVLAKLL KPLKIKYELS GKKIILSSGD
WQGNGNGLLL PEDNAPGLSP KKKLSGKVTD EKGGALPGVN IMVKGTQRGT TTNTEGAFEI
DLEDGDGALL FSFVGYQSKE VILGNQTSLV VSLVPESKAL EEVVVTALGI KKAAKSLGYA
TASVLTEEMT VNRTANFMNA LQGKMAGVNI TSLGSGPAGT SKIRIRGQSS FGGNNSPLIV
VNGVPIDNSN FGARGDAADK GSNRTSDSGD GLSSINPDNI ESMTVLKGAA ASALYGSRAK
DGVIMITTKT RGAGVGIGIE FNSNFTTETP LDYTDYQYEY GQGENGKRPT TPNPTSGQWS
FGERFEPGMT QVLFDGVEVP YVPQRNQITD YYRRGSTFTN TITVSSGGEF GGFSLSLSNL
DNKTILPGSG YHRKTVNLGF TQTMAKKLTV SGNINYSNED RKNPPNIAEQ DYSPVVLYNM
ANSMPLDLLE KYANDANGNE YVWSRFTNRT NPYFALKRFE NVEKDRVFGN LSVRYNFTDW
LYAQVRVGQD YFSREQDYNL PTGSQRQAAA PQGFVNGQYV QDTRSVRELN TDFLISANKT
FGRIGLNINA GGNQMYRKLS RHNVFVQDFY VRDLYTIGNG RQRDATYEIS KRQVNSLYGA
AEISYNDFLF LNGTIRNDWF STLSAANRSI MYPSVTASFV FSQAFTASLP AWISFGKVRV
AYAEVGSDTD VQPYANNLFY NINPQQFPNP NGAGQPLATI NGSTVPNANL RPMRVSEKEV
GLELKLFENR LGLDFTYYDK LSSDQILQAQ TSDASGYLTQ LINVGKGRNR GLEMMVNVSP
YQTKNFVWNL NFNAAYNVTK TLDLGGNVSD AMITVGTGDF TGELRQVVGK PMGQLFGFGY
LRDEQGRQVF DAGNGRPLRT PTQIAFGSAL PKWVGGITNS FNYKNFSASV LVDFKLGHKM
ISGTNHNAWR HGLLKETLPG RAEGFVIGDG VNPNGEVNQT KSVVQAYYET VRSQNIAEQF
VYNAGLWQLR QITFGYDFAR FLPKNIPFIK GARLSIVSNN VAVLKKWVPT IHPDQFGFPS
DNLIGLEATG LPITRSTGFN LNLKF
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