| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1380 |
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| Symbol | |
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| ID | 8224951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1622745 |
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| End bp | 1626323 |
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| Gene Length | 3579 bp |
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| Protein Length | 1192 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644929240 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003085792 |
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| Protein GI | 255035171 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000706938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTG TATACAAGGG CAAAACTGTC CTATGGAGAG CGTATATATT AATCCGTTCT
TTGTGGGAAG CTTACGCCAT AAAACACCGA ACCGACTTTG GCAAAGTCCT CCTGACGATG
AAATTAACCG TGTTGATATT CCTGATTGGT ACATTGCAGG TGCTGGCCGA AAACACGTTC
GCCCAGCAGG TATCGATCAA AAAGAAGGAT GCAACGTTAC TGGAAGTGCT CAAAACCGTG
AGGAAACAGA CGGGCTATCT CTTCATTTGC GACCTCGGTA TGCTCGAACA GGCGGAAAAG
GTCGATATCA ACGTGACCAA CGCGCCGCTG AAAGAGGTGC TCGACGCCTG CTTCTCGGGT
CAGCCATTGA CCTACAACAT TGTAGACAAG ACTATTATCG TCAAGAAAAA ACGCGAACCG
GCCCGAAAGC CGAAGGAAGA GGCGAGCATA AAAGAGCCGT TTTCCTTCAA CTCCGACCCG
GTTTTGAGGG AGCGGATGAC GGAGCTGATG CGCAAGAAGG TCGACCTGCA AACGATCTTC
GACATCAGCG TTACCGGTAA GGTTACCGAC GAAAAAGGCG AGCCGCTCGC AGGTGTGAAC
GTGATCCAGA AAGGCACCCA GCGCGGGACG TCCACCAACG AGCAGGGCGT TTTCAATATC
GACATTACAG ACGCCGACGC AGTGCTCACA TTCTCTTTCG TCGGCTTTTT GTCGCAGGAA
GTGATCGTAG GCCGCCGCAG CCAGATTGAC GTCACATTGC GGGTCGATAA CAAGGCTTTG
GAAGAAGTAG TGGTGGTAGG TTATGGCACG CAAAAGCGCT CGGACCTGAC GGGCTCGGTG
TCGTCAGTGA AGTCGGAAGA AATCAAAAAC CTGCCCGTAC GCAGCGTGAA CGAGGCATTG
CAGGGGCGTG CGGCGGGCGT GCAGGTAACG CGCAACGACG GTGCGCCCGG CGGCTCGTCG
GACATTGTGA TCCGGGGCGT GGGGTCCATT GGCGGAATGT CGCCGCTGTA CATTGTGGAT
GGTATCCGCA TGTCGGCCGG TAACAATTTC AACTTGCAGG ATGTGGAATC CATTGAAGTA
CTGAAAGATG CGAGCGCCGC GGCTATTTAC GGCGCGCAGG CTGCGGGCGG CGTGGTGCTG
GTGACGACCA AGCGCGGCGT AGCCGGTTCC GACAAGATGA ATATCAATTT CAATGCCTAT
TATGGTGTGC GCCAGCCGGT TAACCTGTAT TCGATGCTCA ACACGCCCGA TTATATCAAG
GCTAAGTCGG CTTCGGGCGT GAATACCAGC GGCTGGGGCG ACCCAAATAC ATTGCCTGAC
AACGACTGGG TGGACCAGAT TTACCGCAAC GGCAGCGACC AGAGCTATTC ACTTTCGCTC
TCGGGCGCGA CGGCCAAAAC CAACTATTAC CTCTCGGCCA ACTACCAGCG CGAGGGCGGT
ACCATTATCG ACAACTGGTT TGAGCGCTAC GGTATCCGTT CCAATGCGGA TTTCAAAATC
AACAATCGCC TGAAAGTGGG CGAGACGCTG TATGGCTGGC GTACAGGCAA TAACCCGGTG
CAAACGAGCA CATTCCCGTT CCGCTCGGCG CCACTGATCC CCGTGTACGA CCCGACGAAC
CCCGTAGGCG GCTGGGCAAA AACCGGGACG TTCTTTACAG GCCCGAACCT CGTGGGTAAC
GAGTATATCA ACCACGCCAA AAACATCCAG TATGCACTGG AAGGCAATGT TTACCTGGAT
TGGGAGATCG TAAAAGGGCT GAATTTCCGC TCCACGTTCG GCGCGTCCAT TTACAGCGGC
GCGAACTATA AGTTTACCGA AGCATTTGAT TTTGGTACAC TTAAAAACGT GAATGCATTC
CTGAGCCGCG ACCTGAACAA CTCGCGCAAC CTGACGGCGA ACTTCGTGCT GACCTATAAT
AAAGCATTCG GTCGCCACGA GATCAAGGCC ATGGCGGGTT ATGAGGCTTA CCAGTCGGAT
CTGAGCAATT TGCGCGGAGA GGCGCAGGGT TTTCAGGTGA TCACCTACAA CCTGGGCATG
ACCACCAATC CAAGCACTTA CCGGGCCAGC GGCGGCGAAT TCCCGCAAAC GCGCCTGCTC
TCGCAGTTTG GGCGGATCAA CTATACATTT GCCGACAAAT ACCTGTTCAC CGCCAACGTC
CGCCGCGACG GCTCCGACCG CTTCGGCCCG GCCAACAAAT GGGGCGTGTT CCCGTCGTTC
TCGGTGGGAT GGAAGCTGAG CGAGGAAGCA TTCGTGCGGG ACAACTTTTC GCAGGTTTCC
AACCTGAAAG TGCGTGCGAG CTACGGTAAG CTCGGCAGCA CCAGCAGCAT TCCGCAATAC
ACCTACCAGG CGTCGTACGG CGGCAGCGGC GGTACCAACA TTCACGGCCT GCCCAACGGC
GACCGCTCGA AAGGCTACGC GCTCACCGCC CAGCTCACCA ACCAGAATAT CAAATGGGAG
CAGGTGAACC AGACCGACAT CGGTATCGAC ATTGGTTTGT TCAGAAATGC ATTGAATATC
ACCGCCGACT GGTACAGCCG CCAGACGCAG GACATGATTT ACCAGGTGCC CGTGCCGGTT
TCGGCAGGGT TCTACGGGTC GAGTGTGTAC ACCAATATCG GCCAGATGAG CAACAAAGGG
CTCGAACTGG CGGTCGATTA CCGGGGTAAG GTGAAGGATT TTACCTACGC TGTGAGCGCC
AATGCGGCAT TTAACAAAAA CCTCGTGAAA CAGCTGAGCG GGACCAACAA CAACCCGATC
AACGACGGCG CAGCGGGAGA TTACCTCGAA AGCACAGTTA CCCGCACGCA GGCAGGCAAG
CCGCTGAGCC AGTTCTTCGG GTACATTGTA GAAGGCATTT TCCAAACCGA CTCCGAAGTA
GCCACTTTGA ACCAGAGCGC CCAGGAAGCT GCTGCTGCGG CGGGCAGGCC TACTGCCGGC
GTGTTTTTCC AGAACTCGGG CACCGGCGCG GGCGACCTCA AATTCCGCGA TGTGAATGGC
GACGGCCGCA TTACGATCGA CGACAAAACG TACATTGGCA ATCCGTGGCC GAAGATCACC
TACGGTCTTT CGCTCAATCT CGGCTGGAAA GGCATTGACG TACAGGCGAT GTTCCAGGGT
GTGCAGGGTG TGGATGTTTT TAATGGAAAC AAATATTACA CCCAGTTCTT CGTCGGCGAC
TATAACACGA CTAACGACAT TTTCAAAACC TCGTTCTTCA ACGGAAACGG CCTTACCGAC
CAGCCGCGTG TGGGCACGAC GGACGCTTCG GGCAACTACG TCCGCGACCC GAACTCGAAC
TATACCCGTA TTTCGTCCTT TGTGGTGGAA AACGGTTCGT TCCTGAAACT GCGCAACCTG
CAAGTAGGCT ACACATTGCC GTCGGCATTG GTGAAACAAT GGAAAATGAG CGGCCTGCGC
ATTTACTTCC AGGCTCAGAA CCTGCTCACA TTTACGGGCT ACTCGGGCCT CGATCCGGAA
GTGCTGGGCC GCAATGGCAC CACCGCCCGC GGGCTCGACA CGATTTACTC GTACCCGCGC
ACGCGGCTCG TTTCCATGGG TATCGATCTG AATTTCTAA
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| Protein sequence | MKFVYKGKTV LWRAYILIRS LWEAYAIKHR TDFGKVLLTM KLTVLIFLIG TLQVLAENTF
AQQVSIKKKD ATLLEVLKTV RKQTGYLFIC DLGMLEQAEK VDINVTNAPL KEVLDACFSG
QPLTYNIVDK TIIVKKKREP ARKPKEEASI KEPFSFNSDP VLRERMTELM RKKVDLQTIF
DISVTGKVTD EKGEPLAGVN VIQKGTQRGT STNEQGVFNI DITDADAVLT FSFVGFLSQE
VIVGRRSQID VTLRVDNKAL EEVVVVGYGT QKRSDLTGSV SSVKSEEIKN LPVRSVNEAL
QGRAAGVQVT RNDGAPGGSS DIVIRGVGSI GGMSPLYIVD GIRMSAGNNF NLQDVESIEV
LKDASAAAIY GAQAAGGVVL VTTKRGVAGS DKMNINFNAY YGVRQPVNLY SMLNTPDYIK
AKSASGVNTS GWGDPNTLPD NDWVDQIYRN GSDQSYSLSL SGATAKTNYY LSANYQREGG
TIIDNWFERY GIRSNADFKI NNRLKVGETL YGWRTGNNPV QTSTFPFRSA PLIPVYDPTN
PVGGWAKTGT FFTGPNLVGN EYINHAKNIQ YALEGNVYLD WEIVKGLNFR STFGASIYSG
ANYKFTEAFD FGTLKNVNAF LSRDLNNSRN LTANFVLTYN KAFGRHEIKA MAGYEAYQSD
LSNLRGEAQG FQVITYNLGM TTNPSTYRAS GGEFPQTRLL SQFGRINYTF ADKYLFTANV
RRDGSDRFGP ANKWGVFPSF SVGWKLSEEA FVRDNFSQVS NLKVRASYGK LGSTSSIPQY
TYQASYGGSG GTNIHGLPNG DRSKGYALTA QLTNQNIKWE QVNQTDIGID IGLFRNALNI
TADWYSRQTQ DMIYQVPVPV SAGFYGSSVY TNIGQMSNKG LELAVDYRGK VKDFTYAVSA
NAAFNKNLVK QLSGTNNNPI NDGAAGDYLE STVTRTQAGK PLSQFFGYIV EGIFQTDSEV
ATLNQSAQEA AAAAGRPTAG VFFQNSGTGA GDLKFRDVNG DGRITIDDKT YIGNPWPKIT
YGLSLNLGWK GIDVQAMFQG VQGVDVFNGN KYYTQFFVGD YNTTNDIFKT SFFNGNGLTD
QPRVGTTDAS GNYVRDPNSN YTRISSFVVE NGSFLKLRNL QVGYTLPSAL VKQWKMSGLR
IYFQAQNLLT FTGYSGLDPE VLGRNGTTAR GLDTIYSYPR TRLVSMGIDL NF
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