| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1225 |
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| Symbol | |
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| ID | 8224796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1452663 |
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| End bp | 1455209 |
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| Gene Length | 2547 bp |
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| Protein Length | 848 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644929087 |
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| Product | phospholipase C, phosphocholine-specific |
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| Protein accession | YP_003085639 |
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| Protein GI | 255035018 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3511] Phospholipase C |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR03396] phospholipase C, phosphocholine-specific, Pseudomonas-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0247012 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00268403 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACTCAA GAAGAGAATT TATCCGGAAA GCCACCATGC TCACAGGAGC AGCCGGGTTG
TTCAGCACCC TACCCGCTTC CATCCAGAAA GCGTTGGCCA TCAACCCGCC GAAAGGCACC
ACCTGGAAAG ACGCCGAGCA TGTCGTGATA TTAATGCAGG AAAACCGGTC ATTCGACCAT
TCATACGGAA CGCTCCGCGG CGTACGGGGT TTCAACGACC CGCGCGCGAT CACGCTTCCG
AACAACAACC TGGTTTGGCT GCAAACGAAT GCATTCGGAG AGACTTACGT GCCTTTCCGG
CTGAATATGA AGGAATCCAA AGCGACCTGG ATGGGTTCGC TGCCGCATTC ATGGCCGAAC
CAGGTGGATG CGCGCAATGG CGGAAAATAT GACAAATGGC TCATCGCCAA GCAACCGGGC
AATAAGGATT ATGCCAAAAT GCCCCTGACC CAGGGATTCT ATAACCGTGA GGACATTCCT
TTCTACTATG CAATGGCCGA TGCATTTACG GTGTGCGATC AGAATTTCTG CTCGTCGCTC
ACCGGCACCA CGCCCAACCG CCTTTACCTA TGGACGGGCA CTGTCCGCGA GAATACCGAT
CCAGACAAGC ATTACGCCAA TATCCGGAAT GAAAACGTGA CGGACGACCG CGAAGCGAAA
TGGACGACCT TTCCCGAACG CCTGGAAGAC AACGGCGTTT CGTGGCGGAT TTACCAGAAC
GAGCTGAGTA TCAATACCGG ATTCACCGGC GAAGAGGATT CATGGCTCGC TAATTTCACC
GATAACCCGA TCGAATGGTT CACGCAGTAC AATATCCGCT ACCACACGGG CTACCAGCGC
TATTTGAAAG AACGCCAGCA AATGCTGCCC GGAGAGATCG AACAGGCGCA GGCAAAACTG
AAAACGCTGT CGGGCAAGGA GGCGAATGAT CTTGAAAAAA TACTGAAAGA AAAGCGGGCG
TTGTTGAAAC TCGCCAACGA GGAATTGATC CGTTGGAGCG CCGAGAAGTT CGAAAAGCTT
TCGCAGCGCG AGAAAAACAT TCATAACAAG GCATTTACCA TTAACAAAAA CGACCCGGAC
TATCGGAAGA TCACCACGAT AAAGTACCAC GACGGCGATA TCGAACATGA AGCCAAAGCG
CCGATGGGCG ATGTGCTGTA CCAGTTCCGC TCGGATGTCA AAACCGGTTC ATTACCGACC
GTATCATGGC TGGTAGCGCC CGAAAACTTC TCCGACCATC CCACCTCGCC CTGGTATGGC
GCGTGGTACG TGTCGGAAGT GCTGGACATT CTTACGGCCA ATCCGGAGGT TTGGAAAAAA
ACGATCTTTA TCCTTTGCTA CGATGAAAAC GACGGCTATT TCGACCACGT GCCGCCGTAC
GTCGTTCCCG ATCCTTACAA AGAAGACACC GGCGCCGTTT CGGCGGGCAT CGATTGCAAG
ACGGAGTTTG TGACGTTGGA GCAGGATATG ACCAAAAAAG CGAAGAAAGA CAGTCGCGAA
AGCCCCATCG GGCTCGGTTA CCGCGTGCCG CTCATCGTCG CTTCACCCTG GAACCGCGGA
GGAAATGTGT GCTCGGAGGT ATTCGACCAC ACATCGATAT TGCAATTCCT CGAAAAATTC
GTGAGCCTGA AATCCGGCAA GGAAATCAAG GAAACAAACA TCACCGAGTG GCGGCGCACC
ATTTGCGGCG ACCTGACGTC CACCTTCACT CCTTATGACG GCCAGGAACT AAAGCTGCCC
ACGTTCCTCG AAAGGACGGA GTTTATGGAA AGCATTTTCA ATGCCAAATT CAAGAAACTT
CCGAACGGCT ACAAAGCATT AACCAAAAGC CAAATCGACG AGGTGAATGC CAACCCGCTC
ACCTCTCCGA TCCTTCCGAA TCAGGAAAAA GGAACCCGCC CGGCGTGCCC CATCCCGTAT
GAGTTATATG CCGACTGCGC ATTCAACTCT GCCAAAAATG CATTTGAAAT TAACCTGGAA
GCCAGAAATG GCATATTTCA CGACAAATCT GCCGGGTCGC CATTCATCGT GTATGCCCCG
GGAAAATACA AAAACGAACA GATGAAAGTC TGGAACTACG CCGTGAAAGC TGGTGACGCA
CTAACCGGCT CCTGGAACGT CGGCGACTTC GAAAACCAGC GATTCCATCT GAAAGCATAC
GGCCCGAACG GTTTCTTCCG GGAATATAGC GGCGACAAGG AAAATGCGTC TGTTAAAATC
GAATGTGCCT ATCAACTCAA CCGAAGCAAA AAGCCAACCG GACATATTGA ATTGAAAATC
AGCAACCTGC ATTCTTCCCA AAAATGCAGC CTCACGCTTA CCGACAATGC ATATGGTGCT
GCCGCTCAAA AGATTACGCT CGAAAAAGCG TCCACCGGTG CGAAATCACA AAAAACGATT
GTCCTGAATC TCGCAAAAAG CTTCAACTGG TATGATTTCA CGGTTGCGGT TGAAGGAGTC
GAGCATGCAT TCTCGCGGTT TGCCGGCCAT GTGGAAACCG GTGCGGAAAG CCAAAGCGAT
CCGTTCATGG GGCAGATGAT CAGCTAA
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| Protein sequence | MDSRREFIRK ATMLTGAAGL FSTLPASIQK ALAINPPKGT TWKDAEHVVI LMQENRSFDH
SYGTLRGVRG FNDPRAITLP NNNLVWLQTN AFGETYVPFR LNMKESKATW MGSLPHSWPN
QVDARNGGKY DKWLIAKQPG NKDYAKMPLT QGFYNREDIP FYYAMADAFT VCDQNFCSSL
TGTTPNRLYL WTGTVRENTD PDKHYANIRN ENVTDDREAK WTTFPERLED NGVSWRIYQN
ELSINTGFTG EEDSWLANFT DNPIEWFTQY NIRYHTGYQR YLKERQQMLP GEIEQAQAKL
KTLSGKEAND LEKILKEKRA LLKLANEELI RWSAEKFEKL SQREKNIHNK AFTINKNDPD
YRKITTIKYH DGDIEHEAKA PMGDVLYQFR SDVKTGSLPT VSWLVAPENF SDHPTSPWYG
AWYVSEVLDI LTANPEVWKK TIFILCYDEN DGYFDHVPPY VVPDPYKEDT GAVSAGIDCK
TEFVTLEQDM TKKAKKDSRE SPIGLGYRVP LIVASPWNRG GNVCSEVFDH TSILQFLEKF
VSLKSGKEIK ETNITEWRRT ICGDLTSTFT PYDGQELKLP TFLERTEFME SIFNAKFKKL
PNGYKALTKS QIDEVNANPL TSPILPNQEK GTRPACPIPY ELYADCAFNS AKNAFEINLE
ARNGIFHDKS AGSPFIVYAP GKYKNEQMKV WNYAVKAGDA LTGSWNVGDF ENQRFHLKAY
GPNGFFREYS GDKENASVKI ECAYQLNRSK KPTGHIELKI SNLHSSQKCS LTLTDNAYGA
AAQKITLEKA STGAKSQKTI VLNLAKSFNW YDFTVAVEGV EHAFSRFAGH VETGAESQSD
PFMGQMIS
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