| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1136 |
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| Symbol | |
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| ID | 8224707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1353177 |
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| End bp | 1356515 |
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| Gene Length | 3339 bp |
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| Protein Length | 1112 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644928998 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_003085550 |
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| Protein GI | 255034929 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0229402 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTTAAAG TTTACAGTTC ATCGGCAGGT TCGGGAAAAA CCTACACGCT CACCAAAGAA
TACCTCAAAC TGGCCCTGCA TTCCAATTCG GAATTGTATT TCAGGCATAT CCTGGCCGTT
ACATTCACCA ATGCGGCTGC CAATGAAATG AAGGACCGCA TCCTGCTGAT GCTCCGCACA
TTTGCGGCCT ACACCGAAAC CGACGCGCAG CCGCATCCGA TGATGCGCGA CGTAGTGGTC
GAAATGTACC CTGATACCGA ACATAATACG GAACTTTTTG CAGGTGCGTG CCAGCTGATC
GCCGCGCGGG CGCAAATGGT TTTCGGGCAA ATCCTGCACC GCTATTCCGA CTTTTCGGTG
ATGACGATCG ACAAGTTTAC CCAGCGGCTC ATCAGCAGCT TTACCGACGA ACTGGGCATT
CCATTCATAT TTGAAACACA ACTTGACAGC GACCTGCTTG ACGGCGCCGT GGACCGCCTG
CTGGCCCGCA TTGGGCAGGA AGGCGAGGAG GTGCTCACCG ATATTGTAGA AAAATACTAC
CGCGAGAATG CGGAGGAAGG CAAAAACTGG GGCGCATTGC CAATGCAGAT CCGCGACACG
GCGGGCACTT TGCTGAGCGA GCAGAGCTAC ATGCAGATGA AGCGCGTGGA AGAATTGAAA
ATGGAGGATT GGATCGCGGT GCGCAGGCAA ATGCGAGAGT TCGTACGCGG GCGGGAGGAC
ATGATGACCA AGGACGCGAG GAATGCTTTT GAACTCATTC AATCCACATA CCTGTCCGAA
AAAGACTTTC ACCAGAGCGG CCGGGGCATT TACGGCTACT TCCGCGATCG TGCGGAGGGC
AAAAAGCTCT GGATGGAGCC CAATTCCTAC GTTTATAAAA CCATTGGTGA GGGGGTGTGG
TATGGTGCAA AAACACCCGC GCCCATCCGC GACGAAATCG AGCGGCTGCG GACGGACCTT
GAAAACTATT TTCACCAGAT CGAAAACATC CGCTCTTCCG AGACCGGAAA AATTACATTG
TACAACCAGC TCGACAGGCA TATTTACAAC CTGTCGCTAC TGGGCGAAAT CCGCAAGGAG
TTTGACGCGC TGCTGAAACA GAACAACCAG GTGCATATTT CGGACTTCAA CCGGAAGATC
GTTGACATTG TAGCACGCGA ACCGGTGCCG TTTATCTTTG AGCGGCTCGG AGAAAAGTAC
AATCACATTC TTGTCGACGA GTTTCAGGAT ACGTCCAAGC TGCAATTCGC GAACTTGCTG
CCGCTGATCG AAAATGCATT GTCGGGCGGG TATTTCAACC TCATTGTAGG CGATGCGAAG
CAGTCGATTT ACCGGTTCCG CGGCGGGGAT ATGGACCTGA TATTGCATTT GGCACAAAGC
CAGGTAATGC GGCTGGGCAG CATACTCGGC GACAGCCCGT TCAACGAAGA ACGGCTGTTT
GCATTGGATA ACTACCTGCA TATCAATCAC CTCAAAACAA ACCGCCGCAG CTTCCGGGAG
GTGACCGAAT TCAACAACCG TTTCTTCGGC TTTATCGCCG ACTCGCTGGG CGATGAATAC
CCGCTGATCC GCGAGGTGTA CGACGAGCAT TTTAGTCAGG AAATACCGGA GGGCGTGAGC
GAGGGCGGCC ATGTGGAAAT AGAATTCCTC GAAATGAACG ACGCGCCTGA GGAAGGCGCC
GAGGAAAACT CTTCCGATCA GATGTCGCGG CGGTCGCTGG AACTGGTGAA CAGCCTTCGT
TCAGAGGGTT ACCACTGGCG CGACATCGCG ATTTTGTGCA GAAAGAAAAA AGAAGCCACG
ATGCTGGCCA ACACGCTGAA AGAGGCTGGT TTCCCGCTCA TTTCCGACGA CGCCTTGTCG
CTGGCCTATT CGCGGTCGGT GCATTTCATC GTGTCGTTCA TGAAAGTGCT GCACAGCTCC
GATCACCGGC TCGCGCGGTA CGAGGCGGCC TATCTGTTCC ATCAGGTGAT CCGCCGGCAA
AATCCCGCGC CACACGAATA CGAGGAAATC AGGATGCTCT GCGAAGAGCG CGGGCTCGAT
AGTTTCCTCG GGTATTTCAG GAAATGGGAC ATCAGTATTA CCTCCTTCAA AATGCGGCAG
GTGTCGGTAT TTGAACTAAC GGAACTGCTG ATGCAGCAAT TCGGGCTGTT CAGGCAGCAG
CTGGAAAGCG AATACCTGTT CCGTTTCCTG GATGTGGTGC TCGAATTCGG CAACCGGAAA
AGCAACCACC TCGGTGATTT TTTGAATTAT TGGGAATCAG CAAGATACAA GTTTTCGATC
ACCGTTCCCG ACAACACCGA TGCCATTCGC ATTACCACTA TCCACAAGTC GAAAGGATTG
GAATATCCCG TGGTGATCAT TCCGTATGCC CAATGGAAAG TGAGCCCTAA TGCACGGCTC
GACAGGCTTT GGGTGGATAT GGATGAGGTG GATTACGACG AAATCCGCCT GGCCGACAAG
CCGCATTATG CGAATGCCAA ACTGCGGAGC TCGATGGTAT CGGTCGTAAA AGAACTTGAA
AATACCGTGG TGGGCGAGCA GTACCGCGAA GAACGCATGC GGACGCTGAT CGAAAACCTC
AACCTGCTTT ACGTGGCCTT CACACGGCCG GTGCAGCGCC TTTACGTGCT GGCGAAGCGG
GAGCGCAGGT GGGAGTCTGG GCAGCAGGTC AACCACTGGC TGCGCGATTA CCTGGGCCAG
GAGGGCTTCG TGCCGGCCTG GGACGAAACA ATTTCCCGGT ACGTCATTTC AGAGGACCCG
CGCGATGGAA CGCCCGGTCG CTTGCGCCAC GCACACGTGA GCGCAGGAAC GAGTCCGTTT
GTGATGAAAA GCATACTGAG CAACGACCGC ACCGAATCGC TGCGCCTGCG CCGCATGGCC
GATCGCATTT TCGACGTGCA AACCTTCGAG CCGCGCCACG ACCGCCTGCA AAAAATGCGC
TATCTGCTTA CCCGGCTGAA AACCGTTTCC GACCTGCCCG ATGCACTGGA AAAGCTGGTA
GGCGAAGGGA TTTTTACAAG AAAGGAGACG CGTGAGATCG AAAGCCTTAC CCGCTCGCTG
TTGCAGGACG CGGCGCTGCA AGTGCTTTAT CAGGATGAAA ACCACATTCA GATCAACAAG
GAGCTGCTGA TACCCGGTGG GAAAATGCTG CATATAGACA GGGTCGTTCA ACAGCCGGGC
GGGGAATATA TCTTTATGTC GTTCGTCGGC GGCAACAGTG CCGATGAGCC GCGGCGCCAT
TTGAAGAAGC TGATCAAGGC TTTTATGGAA GGCGGAAAAG TGTCGCGCGG CGTGCTCATT
ACGCTTGAAG ATGAGCTGGT TGAGTGGGTA GACGCGTAG
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| Protein sequence | MFKVYSSSAG SGKTYTLTKE YLKLALHSNS ELYFRHILAV TFTNAAANEM KDRILLMLRT
FAAYTETDAQ PHPMMRDVVV EMYPDTEHNT ELFAGACQLI AARAQMVFGQ ILHRYSDFSV
MTIDKFTQRL ISSFTDELGI PFIFETQLDS DLLDGAVDRL LARIGQEGEE VLTDIVEKYY
RENAEEGKNW GALPMQIRDT AGTLLSEQSY MQMKRVEELK MEDWIAVRRQ MREFVRGRED
MMTKDARNAF ELIQSTYLSE KDFHQSGRGI YGYFRDRAEG KKLWMEPNSY VYKTIGEGVW
YGAKTPAPIR DEIERLRTDL ENYFHQIENI RSSETGKITL YNQLDRHIYN LSLLGEIRKE
FDALLKQNNQ VHISDFNRKI VDIVAREPVP FIFERLGEKY NHILVDEFQD TSKLQFANLL
PLIENALSGG YFNLIVGDAK QSIYRFRGGD MDLILHLAQS QVMRLGSILG DSPFNEERLF
ALDNYLHINH LKTNRRSFRE VTEFNNRFFG FIADSLGDEY PLIREVYDEH FSQEIPEGVS
EGGHVEIEFL EMNDAPEEGA EENSSDQMSR RSLELVNSLR SEGYHWRDIA ILCRKKKEAT
MLANTLKEAG FPLISDDALS LAYSRSVHFI VSFMKVLHSS DHRLARYEAA YLFHQVIRRQ
NPAPHEYEEI RMLCEERGLD SFLGYFRKWD ISITSFKMRQ VSVFELTELL MQQFGLFRQQ
LESEYLFRFL DVVLEFGNRK SNHLGDFLNY WESARYKFSI TVPDNTDAIR ITTIHKSKGL
EYPVVIIPYA QWKVSPNARL DRLWVDMDEV DYDEIRLADK PHYANAKLRS SMVSVVKELE
NTVVGEQYRE ERMRTLIENL NLLYVAFTRP VQRLYVLAKR ERRWESGQQV NHWLRDYLGQ
EGFVPAWDET ISRYVISEDP RDGTPGRLRH AHVSAGTSPF VMKSILSNDR TESLRLRRMA
DRIFDVQTFE PRHDRLQKMR YLLTRLKTVS DLPDALEKLV GEGIFTRKET REIESLTRSL
LQDAALQVLY QDENHIQINK ELLIPGGKML HIDRVVQQPG GEYIFMSFVG GNSADEPRRH
LKKLIKAFME GGKVSRGVLI TLEDELVEWV DA
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