Gene Dfer_1135 details

Gene Information

• Locus tag: Dfer_1135
• ID: 8224706
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dyadobacter fermentans DSM 18053
• Kingdom: Bacteria
• Replicon accession: NC_013037
• Strand: -
• Start bp: 1349612
• End bp: 1353040
• Gene Length: 3429 bp
• Protein Length: 1142 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 644928997
• Product: GAF sensor hybrid histidine kinase
• Protein accession: YP_003085549
• Protein GI: 255034928
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0522922
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 11
• Fosmid unclonability p-value: 0.044499
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGACTCA CATTTCAGCG TCAGGTTTTA CTGGGAATAT CATTTTCAAT TCTTCTCGTG 
CTCGTAGTCG GCTATGTGTC CTACGATGCC ATCCTTTTGC AGCAGGAAAA CGATGGCTGG 
GTAGACCATA CCCGGGAGGT AATGCGGGTA TCCACAGCCG TCAAAAACCG CCTGCTCAGC 
GCCGAGGCCA ACGTGCGCGG CTTCGCGATC ACGGGCAACG GCGCGTTTGA AACGAATTAC 
CTGCAAGCTA CCAGCGAGAT CTGGAAAGAC CTGGAAGCAC TGCGGATACT TGTGCGGGAC 
AACAAAGTAC AAAGCACGCG CGTGGATTCG CTTTCCGGCC TGCTCGAAGA CAGGGTGGGA 
CTCATGAGCC GGCAATACGA AATCCTGAAA GCAGGAAAAT ACAGCATGGA CACCATCCAG 
CGCATTGTTT TGCAGGGTAA GGAAGTGTCC TTGAAAATCG AATTCAGTTT CCGCCGCATC 
GAAAACCTGG AAGAAGGCCT GCTTACGGAG CGCGAACAAC TCGCGTCGAA AAGCTCTGCG 
CGTGCGAAGC AATGCATTGT AATGGGGTCG CTGCTGTTCA TTCTGGTGAT TCTCCTGCTG 
TATTATTTTA TACGAAAAAC TTACCTCGCC CAGCTGGCAA GCGAAAAGGC CATTCAGCTG 
GCTAACCAGA AACTGGAAGC GCTGGCCCTG GAAGACCACG AGAAAAATTG GATACTGAAT 
GCAGCAATGG AATTGTCTGC CGCTGTTCGC GGGGAACCAA CTTTAACGGA GCTTTCGGAG 
CGGTTGCTCC ACAAACTCGG CCAGGTAACG GGCGCCCAGG TGTCGGCGAT GTACCTCGTG 
ACGCGCTCGG GCAATGTGCT CGAGCGCGCG GCGGTGTATG GACTTCCGGC CGCGGATTCG 
GCACCTGCGT ATATTTCTTT CGGCGAAGGC GTGCTCGGGC AGTTTGCCGC CGATCGGGGC 
GACGTCAGGC GGCTTGAAGT GGCCCAGGGC TATTTGCAGG TGAAAACAGC CACAGGACAT 
TCCGCGCCGG GCGTGGTTTT GATCAAAAAT ATCAGCTTCG ACGGTTCGGT GGCTGCGCTC 
ATCGAGATCG GTTATTTGCA GGACCCCGGC TCAAAGCTCG TGAAACTGCT CTCGATGGTG 
TCCGACAATG TGGCGGTAGC CATTATGGCA GCCCGCGCAC GCGAAATCGC AGCCGAATTG 
CTCGAAAAGA CCCAATTACA AGCCGAGGAA CTGGAAAGTC AGCAAGAGGA ACTGCGGGTT 
ACCAACGAGG AACTCACCCG CCAGACATCC CTTTTGCAGG TTTCGGAGGA GGAACTTCGC 
GTGCAGCAGG AGGAATTGAA GCAGATCAAC ACGGAGCTGG AAGAGAAGGC ATTTATGCTC 
GAAGAACAGA AGAGCACGAT CGAGGAAGCG CGCGACCAGA TCCAGCTCAA AGCCGACGAA 
CTGGAACGGA GCGGGCGTTT CAAGAGCGAG TTTCTGGCCA ATATGAGCCA CGAACTGCGC 
ACGCCGCTGA ATAGCATTCT GATCCTGTCG CGCATTTTGG GTGAAAATAA AGGTGCACGG 
CTCAATGAGG AAGAGCAGCG GTACGCCTCG GTGATTTACA ATTCGGGCAA TGATCTGCTG 
ACGCTGATTA ACGACATTCT CGACCTGGCG AAAGTGGAAG CGGGCAAAAT CGAGCTCGTA 
CATGAGCACA TCAGCACGGA ATCGCTTTTG GTAGAAGTGC GGAACACTTT CCAGAAGATT 
GCCGAGAACA AGGGCCTGGA ACTGGCAGTG GAAAAAACCG GCTCCTGCCC GGACATGCTT 
TTGACCGACC ACACACGCCT GTTACAGATC CTGCGCAACC TCATTTCCAA TGCAGTGAAA 
TTCACCTCCG CGCCGGGCAG GGTGTCGCTC ACGATTTCGG AGGCGGACGG TTACCTGCAT 
TTCGAGGTGG CGGATACCGG CATTGGCATT CCGCTTGAAA AACAGGCGTC GATATTCGAG 
GCATTCCAGC AAGCCGATGG CTCAACGAGC CGGAAATACG GCGGTACCGG TCTGGGACTG 
TCTATCAGCC GGGAGCTGGC TAGCCTTTTC AATGGCTCCA TTTCCCTGAG AAGCACGCCC 
GGCGAAGGCT CGGTGTTTAC CCTGAAAATC CCTTACCTGA CCGAATCCGA CGAACAGCCG 
GCGCGGCAGG AACCTGTGGC TGTGGCCGTT GCGCCCGCTC AGCCTGTTGC CGTACCGCCG 
GCATCGGAGA ATGGCAAGGC CCACCGCCTG CTGCTGATCG AAGACGACAC CATTTTTGCC 
GCCGATATGG CTTCCAAAGC GCAAGGGAGC GGCTTCGAGG TCGTAATCGC CTCCTCTGGC 
CGCCAGGCAC TGGAGATGGT GACCGGGTTT GATCCGACGG CGATTATCCT GGATATGCAT 
TTGCCGGATA TGTCCGGCGA GGAAGTGTTG AAGGCATTGA AAAACGACAG CCGCACGCGT 
CTCATCCCGG TACACACGGT GTCGTCGGGC GACTATTTCG ATGAGGAAAT GATTAAAAAC 
GGCGCGATAG GCTTCATGCA AAAGCCGGTG GACGAGCGCT CTGCCCAGCA CATATTCTCG 
GCGTTGAAGC TCGAAGGCAA GGACCTCGGC CAGCAGCGCA TTTTGCTCAT CGAGGACGAT 
GCTTACCAAA GCAAATACCT AGGCGACTTT CTGGCTGGCA ACAACATATT CGTGCTGTAC 
GCCTATTCGG CCGCGGAAGC GCTCAGCCTT CTCGGCACCG ACCGCGTGGA CGGTATTATC 
CTGGACATCA GGCTGGCCGA TATGAACGGG CTCGACCTGC TGGATACGAT CAAGGAAAAC 
CCGCAATGGA GCGCGATACC GGTGGTGGTC AATACGGCCG AGGACCTGAG CCAGGCCGAT 
TTGAGCAGGG TGATGAAGTA TGCGCATCCG GTAGTGATCA AAACTAAAAA ATCCAACGAA 
CGCCTGCTCG ACGAGGTAAA ACTGTTTCTG AAAAAGATCC AGCCGAAAGT GCAGGAGCCG 
GAGGAGCGTA AAGAGTCGTT TAGTAATGCG GTCGTGAATG CGGAACGACT GTTTTTAGGC 
AAAAAACTGT TGCTGGCCGA CGACGATATG CGTAACATTT TTGCCCTGAG CGCCGTCCTC 
GAAGACGCCG GTTTCAGCAT TGAAATCGCG ACGAACGGGA AAGAGGCGAT CAACAAACTG 
GAAGATTACC CCGAAATAGA GCTGATCCTG ATGGACGTGA TGATGCCCGA AATGGATGGG 
ATAGAGGCTA CCCGGCGCAT CCGGCAAGTG CCTCGCTGGG CCAACATCCC CATTATTGCC 
GTGACGGCCA AAGCCATGCA GGGCGACCGC GAGCAATGCC TCGAAGCCGG TGCGAACGAT 
TATATTTCTA AACCCGTGGA CGTTGATAAG CTCCTTTCGC TGATCAAGGT CTGGTTACAT 
GCCGCGTAG 

 

Protein sequence

MRLTFQRQVL LGISFSILLV LVVGYVSYDA ILLQQENDGW VDHTREVMRV STAVKNRLLS 
AEANVRGFAI TGNGAFETNY LQATSEIWKD LEALRILVRD NKVQSTRVDS LSGLLEDRVG 
LMSRQYEILK AGKYSMDTIQ RIVLQGKEVS LKIEFSFRRI ENLEEGLLTE REQLASKSSA 
RAKQCIVMGS LLFILVILLL YYFIRKTYLA QLASEKAIQL ANQKLEALAL EDHEKNWILN 
AAMELSAAVR GEPTLTELSE RLLHKLGQVT GAQVSAMYLV TRSGNVLERA AVYGLPAADS 
APAYISFGEG VLGQFAADRG DVRRLEVAQG YLQVKTATGH SAPGVVLIKN ISFDGSVAAL 
IEIGYLQDPG SKLVKLLSMV SDNVAVAIMA ARAREIAAEL LEKTQLQAEE LESQQEELRV 
TNEELTRQTS LLQVSEEELR VQQEELKQIN TELEEKAFML EEQKSTIEEA RDQIQLKADE 
LERSGRFKSE FLANMSHELR TPLNSILILS RILGENKGAR LNEEEQRYAS VIYNSGNDLL 
TLINDILDLA KVEAGKIELV HEHISTESLL VEVRNTFQKI AENKGLELAV EKTGSCPDML 
LTDHTRLLQI LRNLISNAVK FTSAPGRVSL TISEADGYLH FEVADTGIGI PLEKQASIFE 
AFQQADGSTS RKYGGTGLGL SISRELASLF NGSISLRSTP GEGSVFTLKI PYLTESDEQP 
ARQEPVAVAV APAQPVAVPP ASENGKAHRL LLIEDDTIFA ADMASKAQGS GFEVVIASSG 
RQALEMVTGF DPTAIILDMH LPDMSGEEVL KALKNDSRTR LIPVHTVSSG DYFDEEMIKN 
GAIGFMQKPV DERSAQHIFS ALKLEGKDLG QQRILLIEDD AYQSKYLGDF LAGNNIFVLY 
AYSAAEALSL LGTDRVDGII LDIRLADMNG LDLLDTIKEN PQWSAIPVVV NTAEDLSQAD 
LSRVMKYAHP VVIKTKKSNE RLLDEVKLFL KKIQPKVQEP EERKESFSNA VVNAERLFLG 
KKLLLADDDM RNIFALSAVL EDAGFSIEIA TNGKEAINKL EDYPEIELIL MDVMMPEMDG 
IEATRRIRQV PRWANIPIIA VTAKAMQGDR EQCLEAGAND YISKPVDVDK LLSLIKVWLH 
AA