Gene Dfer_1101 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1101 
Symbol 
ID8224672 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1309231 
End bp1309839 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content53% 
IMG OID644928963 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003085515 
Protein GI255034894 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.115783 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0825265 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAATCAGG AAGAAAACAT ATCTAGCGCC AGTGAGCTGA ATATCAGGCT CTGGCAGCGG 
TTCAAGGCCG GCGATTCGGA GGCGCTCGGG CAGCTCGCCC AAACGCACTA CCGGGCGTTG
TACAACTACG CCACCAAATT CTCCTCCGAT CCCGATTTCA TCCGCGACTC CATTCAGGAG
CTTTACCTCG AACTCTGGGA GCGCCGCAAT TTCCTCTCCG AAACGGCATT CGTCAAATCC
TACCTGCTCA AAGCGCTCCG TCACAAACTC ATCAAAGAGA GCATCCGCCT GAAACGTTTC
CACGAGCCGC AGGCAGCGCT TTTCGACACC GACCCATCCG ACCCGTCCAT CGAAACGAAT
ATCATCGAAG ACGAGCAAAT CCGTTTTCAG AACGGCCACC TCAAACACAT CATCTCGCTC
CTTTCCAAAA GGCAGCAGGA AATCATTTAC CTGCGCTTCT ACCAAAACCT CGACAACGAA
GACATCGCCA GCGTCATGGG CCTCGGCCGC CAGAGCGTCT CTAACCTGCT TTACCGGACA
TTGAAAGAGA TCAAGGAAAT CTGGGCACCT GCGGAGTTTT TTTGGGTGTT GCTGGTAATG
TTATCATAG
 
Protein sequence
MNQEENISSA SELNIRLWQR FKAGDSEALG QLAQTHYRAL YNYATKFSSD PDFIRDSIQE 
LYLELWERRN FLSETAFVKS YLLKALRHKL IKESIRLKRF HEPQAALFDT DPSDPSIETN
IIEDEQIRFQ NGHLKHIISL LSKRQQEIIY LRFYQNLDNE DIASVMGLGR QSVSNLLYRT
LKEIKEIWAP AEFFWVLLVM LS