| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1085 |
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| Symbol | |
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| ID | 8224656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1282796 |
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| End bp | 1284913 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644928947 |
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| Product | RNA binding S1 domain protein |
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| Protein accession | YP_003085499 |
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| Protein GI | 255034878 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.972092 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTACA CCCTAATTGC ACAACAGGCC GGCGTGAGCG ACAAGCAAGC GCGGAATACC
ATTGCGCTGT TCGAAGAAGG CGCCACGGTG CCGTTTATCG CCCGGTATCG GAAGGAAGCG
ACCGGCGGGC TCGACGAGGT ACAGATCGGC AACGTCCGGG ACGCCTGGCA GAAGCAGCAG
GAAGTCGAGA AACGGCGTGA GGCTATTTTG AAGAGTATCG GGGAGCAGGG GAAACTCACT
CCCGATCTGA AAAAGAAGAT TGAAGCCGTT TTTTCACTGA CTGAGCTCGA AGACCTTTAC
TTGCCCTATA AACAGAAAAG AAAGACCCGC GCAACCATTG CCATTGAAAA GGGTCTGGAA
CCGCTTGCAA AGCTGATTTT TGAAGGAAAA GAGCGCGATC CGGAAGGCAA GGCAGCATCG
TTCCTGAATG ATCAGGTGGC CAATGCGGCC GATGCATTGC AGGGCGCGAG GGATATTATC
GCCGAATGGA TCAACGAGAA TCAGGAAGCG CGGACGAAGA TCCGGTATAC TTTTCAGAAG
GGGGCGGTCA TCACGTCGAA AGTCAAAAAG AAAAAAGAGG AGGAAGGGGC CAAATACCGC
GATTATTTCG AGTTTTCGGA GCCTTTGGCC AAAATACCTT CCCACAGGCT GCTGGCATTG
CGCCGGGGCG AGGAAGAGGG AATCCTGAGC GTGGATATTT CGCCGGACGA GGACTCGGCG
CTCGAAGCGC TGGACCGGCT ATTTATGTTT GGGACGGAGG CCTGTAAAGA CCAGCTCGAA
CTCGCGATTG GCGATAGTTA CAAGCGGTTG CTGAAACCGT CCATTGAAAC GGAGTTTGCC
AATTTGTCCA AGGAAAAAGC CGACGTGGCC GCGATCCAGG TCTTCTCGGA AAACCTGCGG
CAGCTGCTGC TCGCATCGCC ATTAGGCCAG AAAACCGTGC TGGCGATCGA CCCGGGCTAC
CGCACGGGCT GCAAAGTAGT GGTGCTCGAT GGCCAAGGCA ACCTCATGGC CGACCACGTC
ATTTATCCTT TCGACAAGCC GGCTGATGCC GCCGCACGTA TCAGCGAGCT CATCCGTAAG
CACAAGGTGG AGGCCATCGC CGTCGGTAAT GGAACGGCTG GGCGCGAGAC GGAGGATTTT
GTAAAGAAGC TGCTCGACGG TTCGGAAAAA TCTTCGGAAA TCGGGCTTTT CATGGTGAGC
GAGCAGGGCG CGTCCATCTA CTCGGCGTCG GAAGTGGCGC GGGAGGAATT CCCCGATAAG
GATGTTACCG TTCGCGGCTC TGTGTCGATC GGGCGCAGGC TTATGGACCC GCTTGCGGAG
CTCGTGAAGA TCGATCCGAA ATCCATTGGT GTAGGCCAGT ACCAGCACGA TGTTGATCAG
AATTCATTGC GAAATGCTTT GGATATAGTC GTAGAAAGCT GCGTGAATTC CGTAGGCGTA
AATCTCAACA CGTCGAGCAA GCATTTGCTG CGCTATGTTT CGGGCCTTGG GCCCGCTTTG
GCGCAGAATA TCGTGGATTT TCGGGCTAAA AACGGAAATT TCAAATCACG CCAGCAATTA
TTGAAAGTGC CGCGCCTCGG GGCCAAGGCT TTCGAGCAGG CCGCAGGCTT CCTGCGTATT
GAAAATGGAG CTAATCCATT GGATAACAGC GCAGTACACC CGGAGCGATA TGCCCTCGTA
GAGCAAATGG CGAAGGATGC AGGCAGTACT GTGAAGGATC TGATGCAGAA AGCCGAGCTG
AGGCGGCAGG TCAGGATCGA AAAGTATGTT TCGGAGTCGG TGGGGTTGCC TACGTTAAAG
GACATCCTGG CCGAGTTGGA AAAACCGTCG CGTGACCCGC GCGCGGAAAT CAAGAAGTTT
GAGTTCGACA GTTCCGTCCG GAAGCCCGAG GACCTGAAAG TCGGAATGGT GCTCCCGGGC
ATCGTCACCA ACATCACAGC CTTCGGCGCG TTTGTCGATG TGGGCGTGAA GCAGGACGGC
CTGGTGCACG TGTCACAAAT GGCCGAGAAG TTTGTGAAAG ATCCGAACGA AGTCGTGAAG
TTGCAGCAGC ACGTGACCGT GAAAGTCACC GAGGTAGACC TCGCCAGGAA GCGGATCGCA
TTGTCGATGA AACTTTGA
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| Protein sequence | MNYTLIAQQA GVSDKQARNT IALFEEGATV PFIARYRKEA TGGLDEVQIG NVRDAWQKQQ
EVEKRREAIL KSIGEQGKLT PDLKKKIEAV FSLTELEDLY LPYKQKRKTR ATIAIEKGLE
PLAKLIFEGK ERDPEGKAAS FLNDQVANAA DALQGARDII AEWINENQEA RTKIRYTFQK
GAVITSKVKK KKEEEGAKYR DYFEFSEPLA KIPSHRLLAL RRGEEEGILS VDISPDEDSA
LEALDRLFMF GTEACKDQLE LAIGDSYKRL LKPSIETEFA NLSKEKADVA AIQVFSENLR
QLLLASPLGQ KTVLAIDPGY RTGCKVVVLD GQGNLMADHV IYPFDKPADA AARISELIRK
HKVEAIAVGN GTAGRETEDF VKKLLDGSEK SSEIGLFMVS EQGASIYSAS EVAREEFPDK
DVTVRGSVSI GRRLMDPLAE LVKIDPKSIG VGQYQHDVDQ NSLRNALDIV VESCVNSVGV
NLNTSSKHLL RYVSGLGPAL AQNIVDFRAK NGNFKSRQQL LKVPRLGAKA FEQAAGFLRI
ENGANPLDNS AVHPERYALV EQMAKDAGST VKDLMQKAEL RRQVRIEKYV SESVGLPTLK
DILAELEKPS RDPRAEIKKF EFDSSVRKPE DLKVGMVLPG IVTNITAFGA FVDVGVKQDG
LVHVSQMAEK FVKDPNEVVK LQQHVTVKVT EVDLARKRIA LSMKL
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