| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1054 |
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| Symbol | |
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| ID | 8224624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1249361 |
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| End bp | 1250419 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644928915 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_003085468 |
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| Protein GI | 255034847 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.913573 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.799861 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTACTTA CTATTACTAA ATATATGTTA TTCAAAATCA ATACCTTATC TCAGCTATTT
TTATTAGTAC TAATATTACT AAACTGCACG AGTCAGCGTA AAAAGGATGC CGCCGATTTT
TTCCTGAAAG GGAACCAGGC GTTAAATCAA AAGAACTATG CCGAAGCGCT GAGGCTCTAC
GACGAAGCGA TTGCCAAAAA TGCAGATTTT TCGGACGCCT ATCTCAACAA GGGCATAACT
TTGTTGAAAT TGGGCCGCAC AAATGATGCG CACGAGATTT TGTCAGAAGC GATCCGCATT
GATCCTACCT TGGTACAGGC AAATCTCGTG CGGGCGGAAG CATCCCTTAA TTTGGGCCGC
CTGAACGACG CCAAAGCAGA TCTCGAACAA ATTGAAAAGG AATATAAGGA CTCCACCCGC
TTCCACCTCG TAAAAGGCAA CCTGCTCGAC GCGCAAGGCA ATTCATCGCA GGCGATACCC
GAATACGACC GCGCCCTCCA ACTCAGCAAG ACGAACATCG AAGCTTACGT GAACCGCGGC
GCCGTGTATT ACCGCATGGG CTCCTACACC GAAGCCCGGT TGGATTTTGA AACGGCCGTC
GCACTCGACC CCGCGCAGCC GCAGGCATTG AACAACCTTG GACTGATCGC TTCCAGGAAT
CACCAATGGC AGCAAGCCAT CGCCTACTTC GACCAGGTGC TTAGCCGCGA TCCTTCGGAG
CCGTATTCAC TCAATAATAA AGGGTATGCC CTGCTGCAAT CCGGCAAGCC GGAGGAGGCG
AAAGTGCTGA TCGAGCGATC GCTCGAAAAG CTGCCTGAAA ATGGTTATGC ATTGCGTAAT
CTGGGCATGT ATTACCAGCA AAAGGGAAGC ACGCAGGAAG CGCTGAAAAG CTTCAATAAA
GCGATCGACA TAGCCGAACC TGTGGAATTG CTCTACGGAT TGGCCGGCCA GGCCTATCAC
GCACAGAAAA ACATGGCAGA GGCTTGCAGG ATATGGAAGC AGGGAGTCGT GCTAAAAGAC
TCCCTGGCGA TTGCGGAGGC GGGCAAATAT TGTCGCTAA
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| Protein sequence | MLLTITKYML FKINTLSQLF LLVLILLNCT SQRKKDAADF FLKGNQALNQ KNYAEALRLY
DEAIAKNADF SDAYLNKGIT LLKLGRTNDA HEILSEAIRI DPTLVQANLV RAEASLNLGR
LNDAKADLEQ IEKEYKDSTR FHLVKGNLLD AQGNSSQAIP EYDRALQLSK TNIEAYVNRG
AVYYRMGSYT EARLDFETAV ALDPAQPQAL NNLGLIASRN HQWQQAIAYF DQVLSRDPSE
PYSLNNKGYA LLQSGKPEEA KVLIERSLEK LPENGYALRN LGMYYQQKGS TQEALKSFNK
AIDIAEPVEL LYGLAGQAYH AQKNMAEACR IWKQGVVLKD SLAIAEAGKY CR
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