| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1045 |
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| Symbol | dapD |
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| ID | 8224615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1237827 |
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| End bp | 1238642 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644928906 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_003085459 |
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| Protein GI | 255034838 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.485507 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.309423 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATTTCA CTGCACAAAT TGAAAATTAC TGGGCTAACC GGGAATTACT GAAAGATGAA
TCGGCAAAGA ATTTTATCCG GGATATCATT GAGGAAGTCG ATAAGGGAAG GCTTCGTGTG
GCCGAGCCGG ATGCTAATGG CGGATGGATC GTTAACGAAG CGCTAAAAAA AGCGATCATC
CTTTACTTCC CCATCCAGCA AATGCATGTT AGCGAAGTTG GCATTTTTGA GTACCATGAT
AAAATGAAAC TAAAATCAGG CTACGAGCAA CTAGGCGTAC GCGTGGTGCC GCCGGCCGTT
GCGCGATATG GTGCTTACAT TTCCAAGGGG GTTGTGCTAA TGCCGTCCTA TGTGAACATT
GGTGCCTATA TCGACGAAGG AACAATGGTC GATACCTGGG CGACTGTCGG TAGCTGTGCT
CAGATCGGCA AGAACGTTCA CCTGAGCGGA GGCGTAGGAA TAGGAGGGGT GCTCGAACCC
GTCCAGGCAG CTCCCGTTAT TATAGAAGAT GGCGCGTTCA TTGGTTCGCG CTGTATCGTT
GTCGAAGGTG CGCGCGTTGG TAAAAGAGCG GTTCTCGGTG CCGGTGTTAC GATTACAGGC
AGCTCAAAAA TCATCGATGT AACAGGCAGC GAACCAGTAG AGTACAAAGG TTACGTGCCG
GAAGACTCCG TAGTTATCCC CGGAACGCTA CCCAAAGAAT TTGCGGCGGG AACCTATCAT
GTCCCTTGCG CCCTGATCAT CGGCAAGCGC AAACCAAGCA CGGATCTCAA AACTTCCCTG
AATGACGCAC TACGCGACAA TAGCGTAGCC GTGTAG
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| Protein sequence | MDFTAQIENY WANRELLKDE SAKNFIRDII EEVDKGRLRV AEPDANGGWI VNEALKKAII
LYFPIQQMHV SEVGIFEYHD KMKLKSGYEQ LGVRVVPPAV ARYGAYISKG VVLMPSYVNI
GAYIDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP VQAAPVIIED GAFIGSRCIV
VEGARVGKRA VLGAGVTITG SSKIIDVTGS EPVEYKGYVP EDSVVIPGTL PKEFAAGTYH
VPCALIIGKR KPSTDLKTSL NDALRDNSVA V
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