| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1042 |
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| Symbol | |
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| ID | 8224612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1231564 |
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| End bp | 1234740 |
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| Gene Length | 3177 bp |
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| Protein Length | 1058 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644928903 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003085456 |
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| Protein GI | 255034835 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.951864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.539314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGGCC AGGTGTTAGT CGGCGTCGCA TTCGCTGGTT TCCATGAAGT CAGGGCGAGT
GCTATGCCGC TGAATGAAGT AATTACGGTC ACCGCGGACC GCCCTCTGAG CGGAAAAGTG
ACTGACGAAA ATGGCGCCGG CCTTCCGGGC GTGAGTGTAA TCGTGAAAGG TTCCAGCACC
GGAACTGTGA GCGATACGGA CGGCCGCTAC TCCATTAATG TCCCTGATTC GGGCAGCCCA
ATCTTAGTTT TCTCCTTCGT CGGGTACGTA CCAAAAGAGA TTACAGTGGG AAATCAGACG
AATTTGGACG TTCAATTAGC TGTGGACAAC AAAGCATTGG AAGAAGTGGT GGTAGTGGGT
TACGGCACCC AGCGCAAGCG CGACATCACT TCGGCAGTAT CCAACATTAA TATGGAGGAT
ATCGGGGAAG TTCCTAAGTC GAATGTTACC CGAATGATCC AGGGCCAGGC GCCGGGGGTG
ATCATCAAAC AAAAGAGCGG GACCCCGGGC CAGCAGTTTG AAGTAAAGGT GCGCGGGATC
AGTTCGCTTG GCGCAGGCAG CGACCCGTTG TATGTAATCG ACGGCTTTCC TGTTGGTATA
TCGGTCGGAC AAAACCTCAA CCCCAACGAC ATCGAGACGA TCACCGTCCT GAAAGATGCC
GCATCCACGG CCATTTATGG TGCACGCGGT TCCAACGGGG TGGTTCTGAT CACGACCAAA
TCGGCCAAAG AAGGAAAAAC AAATCTTAAT GTGTCAGTCG ATTACGGAAT TCAGAATGTG
CCCGACGCCC GCAAAACCAA AGTGCTGAAT GGCCAGGACT TCGCGCAGTT TAAGAAGGAA
GTTTTTATCG GCCGGTACGT ACTGGCTAAC AAGCGGCAGC CTACCATTGA GGAGATCCCC
GCTGACTTCC GCAACCCTGA AAACACCCAG TATTCCACCA ACTGGTTTGA CCTCATCCTG
AACAACAATG CGCCTTATAC CGATGTGAAT GTATCGTTAT CATCCGGAAA AGGGCCCATC
AAATCAATGG TATCCATTGG TTACTACAAG GAGGAAGGTG CATTGAAATA CACGGATTAC
GACCGTGCGT CCGTTCGCAC GAACCTGGCA GGCGACGTCA ACAAATTCAT TTCGATGGGT
GTCAATATCG CAGGTAGCTA CTCACGGTCG AGCCTCGCGG CTACGGACGG CCGGAGCGCG
CTGGTGGGTT TGACGCTCAT CAGCGACCCG CGGTATCCGG CTTACGACGA AAAGGGTGAA
TTGATCCCGT ACTACAATGG CGTGGGTGAT ATTTTCGGTT TTCCCAATCC ATTGTACTTG
CTGAAAGCGA TAAGCCGCGA CCGCAACATC GCCGACGTAC TCGCGAATGG CTACATTGAT
TTCAACATTG CCAAAGGCCT GAAATTCAGG ACGTCGGTGA ATGCGAAGAT CAATTATAAC
AAATACAAGG AGTTCGTTCC TTCCACGATC GGTCTGGCTA TTGCAACGGG CACCAACGGC
GCGCCGCCAC GGATTGCAAC CGAGCGTGAC GATGCGGAAG AGCTGCGTAA CTACACGGCG
GACCAGTTGC TTACATACAA TGTCAATTTC GGCGAAAACC ACCATCTCGA TGCCATGCTC
GGCTACACCG CTCAGCAGGA GATCGTGAGA GGTTTGTACG GCTCCGGTAA CACATTCCCC
GATGACCTCG CTCCGTTCCT CGGCAATGCG ACCATCCGTT CGTCCAACTC GATGGAGCGC
AAATGGACTA TGCTTGCCTA CCTGGCACGT TTGAACTACT CATTCAAAGA TCGTTACCTG
TTCTCGGCAT CATTCCGCCG CGAGGGCAGC TCCCGTTTCA GCGAAGGGCA TCAGTTCGGC
AACTTCCCGG CGGTTTCGGT GGGTTGGAGG CTTTCGGAGG AACCGTTTAT CCCCAAAGCA
GCCTGGCTTA ACGACTTGAA ACTACGCGGT AGCTGGGGTA TGACGGGTAA CAACACCTAT
CAGGTAAGTG CCAACAACAA CTTTGGTACG GGACAAAATG CAGGCGACGA TGGCAACTAT
GCCAGCCTCG CGTTCCTAGG TTTGAACAAC TACGTTTTCA ACAACACGCT GGCGCCCGGA
AAGACGGTGA CACGTTTTGC CAATTCTGAA CTGACCTGGG AAAAGTCCAA TCAGCTCAAC
GTCGGTTTGG ACCTGACCAC ATTCAATAAC CGGCTTGTTT TCACGGTGGA GTATTACAAA
AAGATCACCG ACGACATGTT GCTCGGGTAC AGCATTCCAG CCGTTTCAGG CTTTACTTCT
ACCTTGAAAA ACCTGGGTAA GGTTCAGAAC CAGGGAGTTG AGATCGCCGG TAGCTACCGC
ATGAAAATCG GACAGGTGAA TTTCCGTACC AATGCAAACA TTACTTTCAA CCGCAACAAA
ATCCTGGCGA TCCGCGGACA AAACGACTTT ATCCTGCAAG GAAGCCAGTA TGGCGGCTAT
AACATTCAGC AGGTGGGACG GCCCATCGGG ATGATCTTCG GATACCGCAA GCTGGGTATC
TTCAACACCC AGGCCGAGAT CGACGCCGCA CCGCTGCAGG AAGGCGCTGT GCCGGGAGCC
ATGAAATTCG CCGATTTGCA CGGAGCGCCC GACGGCGGCC CGGATGGCAT TGTGTCGTAT
GATACCAAAG ACATGACCGA AATCGGTAAC CCTAACCCGA AATTCAACTG GGGCTGGACC
GTGGGAGCGG ACTTCAAACG CTTTGATGTG AGCGTGTTGC TGATGGGCGC CCACAAGTTC
GATATCTACC GGAACATTGA GGCTTCGACC ATGAACATGG ACGGCGTTTT CAACGTGCTC
GAAAAAGCGA AAGACCGCTG GCGCTCGCCG GATAACCCGG GTTCTAACCC CAATGCGAAA
AACTCTCAAG GCGGAACGGA TTATTTCAAA TGGTCACGCG AGAGCAGCGA ACGCTATGTT
TACGATGGCA GCCACACCTG GATCAAGAAC GTGACGATCG GATATACACT GCCCAAAGTG
GATGGAATCC TGTCGGACGC ACGCATCTTC GTCAACCTGG CCAACCTGTT GCTGATCACG
AAATATCCGG GTAACAACCC CGACGCCGGC GTAAGAGGCG GAACGGAGCT GAACAACGAC
GATGAGTCGT ACCCCGTTCC GAGAACATTC TCCGCGGGTA TTAAACTTAA CTTCTAA
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| Protein sequence | MLGQVLVGVA FAGFHEVRAS AMPLNEVITV TADRPLSGKV TDENGAGLPG VSVIVKGSST
GTVSDTDGRY SINVPDSGSP ILVFSFVGYV PKEITVGNQT NLDVQLAVDN KALEEVVVVG
YGTQRKRDIT SAVSNINMED IGEVPKSNVT RMIQGQAPGV IIKQKSGTPG QQFEVKVRGI
SSLGAGSDPL YVIDGFPVGI SVGQNLNPND IETITVLKDA ASTAIYGARG SNGVVLITTK
SAKEGKTNLN VSVDYGIQNV PDARKTKVLN GQDFAQFKKE VFIGRYVLAN KRQPTIEEIP
ADFRNPENTQ YSTNWFDLIL NNNAPYTDVN VSLSSGKGPI KSMVSIGYYK EEGALKYTDY
DRASVRTNLA GDVNKFISMG VNIAGSYSRS SLAATDGRSA LVGLTLISDP RYPAYDEKGE
LIPYYNGVGD IFGFPNPLYL LKAISRDRNI ADVLANGYID FNIAKGLKFR TSVNAKINYN
KYKEFVPSTI GLAIATGTNG APPRIATERD DAEELRNYTA DQLLTYNVNF GENHHLDAML
GYTAQQEIVR GLYGSGNTFP DDLAPFLGNA TIRSSNSMER KWTMLAYLAR LNYSFKDRYL
FSASFRREGS SRFSEGHQFG NFPAVSVGWR LSEEPFIPKA AWLNDLKLRG SWGMTGNNTY
QVSANNNFGT GQNAGDDGNY ASLAFLGLNN YVFNNTLAPG KTVTRFANSE LTWEKSNQLN
VGLDLTTFNN RLVFTVEYYK KITDDMLLGY SIPAVSGFTS TLKNLGKVQN QGVEIAGSYR
MKIGQVNFRT NANITFNRNK ILAIRGQNDF ILQGSQYGGY NIQQVGRPIG MIFGYRKLGI
FNTQAEIDAA PLQEGAVPGA MKFADLHGAP DGGPDGIVSY DTKDMTEIGN PNPKFNWGWT
VGADFKRFDV SVLLMGAHKF DIYRNIEAST MNMDGVFNVL EKAKDRWRSP DNPGSNPNAK
NSQGGTDYFK WSRESSERYV YDGSHTWIKN VTIGYTLPKV DGILSDARIF VNLANLLLIT
KYPGNNPDAG VRGGTELNND DESYPVPRTF SAGIKLNF
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