| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1036 |
|---|
| Symbol | |
|---|
| ID | 8224606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 1219640 |
|---|
| End bp | 1222885 |
|---|
| Gene Length | 3246 bp |
|---|
| Protein Length | 1081 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644928897 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003085450 |
|---|
| Protein GI | 255034829 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.105271 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAT TTCGACAATC TCCTTATTGT GCAAGGTTGA ATTCGATCCT GAAACTTTCT
GTGGGCCAGG CGCTCATCGG GGTGGCATGC GGATTCAATG TCATGGCCAA TAACAGTTTC
AACCCTAATC CGCTGACGAT AAACAGTAAG TTCTCTGTCG ACCGGACGAT TAAAGGGAAA
GTGACCGACG ACACAGGTGA AAAACTGCCG GGCGTGAGCA TTGTGCTCAA AGGCACCACC
ATAGGAACAG TGTCCGACGC GGATGGATTA TATTCGATCA CTATTCCGGA CAATGGAGCG
GTTCTCATCT TTTCTTCCGT GGGTTTCCTC ACCCAGGAAG TACCGGTAGG CGCGGGCTCG
ACCGTTGACA TTAAACTCGC AACCGACGCC AAGGCACTTA CTGAAGTCGT GGTGGTGGGT
TACGGTAGCC AGTTGAAAAA AGAAATCACA GGAGCGGTGC AAACCGTTAA AAGCGAGGAG
CTGAAAGACA TTCCCGTTTC GCAGGTGACG CAAAAGCTGC AAGGACGGCT TGCCGGTGTG
CAGATCAACC AGACGACCGG TAAGCCAGGG CAGGGAATGG CCGTGCGTAT CCGCGGCCAG
GTATCGGTAA CGGCCGGTAG CGACCCGCTT TACGTGATCG ACGGTTTCCC GATCACCGGC
ACCATCGGCC AGATGAACCC CGATGAAATC GAGGACATTA CCATCCTGAA AGATGCCGCT
TCGACGTCCC TTTACGGTTC GCGTGCGGCA AACGGCGTTG TACTGATTAC GACCAAACGC
GGCACGCCCG GCAAAACGAC CATCAGCCTC AACGCATTCG CAGGTATCCA GAAAGTCCCG
ATGAGAGGAC GCATTAAAAT GCTGAACGCC GAAGAATTCG CGCAGTTCAA GAAGGAGTCG
TTCGAAGATG AGAACCGCCC CGTACCCAAG GAATTCGAAC GCCCCGAAGA TTATCGCGGC
AAAAACAACG ACTGGTACGA TGCAATGCTC CGCACAGCGC CCATTCAGAG CTATAACCTC
ACGATCAGTT CGAATAAGGA AAACATGAGA ACTTCCCTCG TGGCAGGGGT TTTCAATCAG
AAAGGGGTGG TGCTTAACAA CAACTACAAG CGTTACTCGC TGCGTATGAA CACCGATTTT
GACATTTCTT CGAAGGTCAA AATCGGTTTT AACCTGGCCC CTCAGTTTGT GTACGACAAC
ACACCCAGAA CCGACGGTGA CCGCGGTACC GGTGTGCTTT TCAATGCATT GCACACATGG
CCGGTTATGC CGATCCGCGA CGAAAATGGC GAGCTCACTA AATTCAACCG CTTCCCCGAC
GCAACCGGTA ACATTTTTGC CTATCCGAAC TGGGTACGTG CAGCCAACGA GCTGACCAAC
GAAACGAAGA TCAACAAGCT GCTTGGTAAC ACTTACCTGC AATACACCCC GGTGAAAGGG
CTGACGCTGA AATCGACGTT GAACGTCGAG ATGGAAAGCA ACAAGTTCTT CTTCTTCAAC
CCGTCCACGG CAACCAGCAA TATCAACGTA GCAATCCCGA CCACAGCCGT TTCGATCCGC
CAGAATTATC AGAACTTCTC ATGGCTGAAC GAAAACCTTG CAACCTACAA CCACAGCTTT
AACGAAAAGC ACAACTTCGA GTTGCTCGGT GGGGTAACCC TGCAAAGATT CCGCCAGGAA
TTTGACCGTA TTACAGCTAA CACTTATACC GACGACCGCC TGCCGACCAT TCAGGGTGCG
ATCAACATCG ACCGCGGGGG TAGTTTTAAC GTGAATGGTA TTTCAGGTTC CAACACTTTC
AATGGTGCCA ATGAGTGGGC GCTGATGTCG TACATTTCCC GTTTGACCTA CAACTATAAA
GGCAAATACC TCTTCACCGC GGCCCTTCGT GCGGATGGAT CTTCGCGATT CGGGGCGGAC
AACCGCTGGG GTACTTTCCC TTCGGCGTCT GTTGGCTGGG TTATTTCGGA TGAAGATTTC
ATGCAGTCGA TCCCGAAAGT GTCTTTTGCA AAAGTACGCG CGAGCTTTGG TGTGATCGGT
AACAACAACA TCGGTAACTA CACGCAATAC GGACTCGTGA GCAACACGAT CAATATCGTG
AACGGCTCGA ACGTATCAAC CGGAGCAGCC ATCACTTCGC TGGCTAACCG GAATTTGGGC
TGGGAAACGA CCAAGCAGTT CGACATTGGT TTGGATGTAG GCTTGCTCAA CGACCGCATT
CAGCTGATCT ACGATTTTTA CACAAAACGG ACTACCAACC TGCTCTATGC GGTTCAGGTG
CCGCAGGAAT CAGGTTTCAG CAACTACAAC GACAACATTG GCGAGATCAA GTTCTGGGGA
CACGAAGTAG GTGTTACCAC CCGTAACCTG GTTGGCAAGC TCAAATGGAC TACCAACGCC
AACATCTCGT TCAACCGCAA CGAAGTAATG GAGCTCGCTC CGGGCATCGA CCGCGTGTAT
GGCACTTTCC ACATTACGCA GGTTGGTCAG CCATTCGGCC AGTTCTATGG TTTGGTCAAA
GAGGGCTTCT ACATGAGCAA AGAAGAGGTG GCAAGTTCGC CCATCATCCC TGGCCGGTCC
GCAATCGGTA CGATCAAGTT TAAGGATGTG AATGGCGACA AGGTAATCAC CAACGGCGGC
GACAATGACG ACCGCACGAT TATCGGCAGC CCATTCCCGA AATTCACTTA CGGTATCACC
AACAACCTGA GCTACGGCAA CTGGGACCTT TCCATCGTAG GTTCGGGTTC GCAGGGTAAC
CAGTTGTGGG TGCGCCACTT GTACAGTACC GCCAACCTCG ACGGGGTGTT CAACATGGTT
GCCGGAGCGA AAGACCGCTT CCGCGTGAAA AACGGCCCGA ACCCGCTAAC GGGTAAGCCC
GAAGCACAAA CCGTGATCAC ACCGGGTAAG GGAATGTACG GTGCTACCAA CAACGGGGGT
AATTACACCG GCATCGAACG CGACTGGAAT AGCTCTCATT TCCTCGCTGA CGCGTCTTAC
TTCACGATCA AGAACATCAC ATTGGGTTAC AACCTGGGTG GAATCAATAA GTTTTTCAAA
TCGGCCCGTC TTTACGCCAG CGTTCAGCAG GTGTATGTAT TTACAAAATA TTGGGGTGGA
CCTAACCCGG AAACCAGCGC GCAAGGCGAC GGACAGGGTG ATGGCGGTAA CCTGAGCCAG
GGTGTGGACC TTTCAAACTA CCCAGTGCCA CGTACCTGGA CATTGGGTGT GAACCTGAAC
TTCTAA
|
|---|
| Protein sequence | MNQFRQSPYC ARLNSILKLS VGQALIGVAC GFNVMANNSF NPNPLTINSK FSVDRTIKGK
VTDDTGEKLP GVSIVLKGTT IGTVSDADGL YSITIPDNGA VLIFSSVGFL TQEVPVGAGS
TVDIKLATDA KALTEVVVVG YGSQLKKEIT GAVQTVKSEE LKDIPVSQVT QKLQGRLAGV
QINQTTGKPG QGMAVRIRGQ VSVTAGSDPL YVIDGFPITG TIGQMNPDEI EDITILKDAA
STSLYGSRAA NGVVLITTKR GTPGKTTISL NAFAGIQKVP MRGRIKMLNA EEFAQFKKES
FEDENRPVPK EFERPEDYRG KNNDWYDAML RTAPIQSYNL TISSNKENMR TSLVAGVFNQ
KGVVLNNNYK RYSLRMNTDF DISSKVKIGF NLAPQFVYDN TPRTDGDRGT GVLFNALHTW
PVMPIRDENG ELTKFNRFPD ATGNIFAYPN WVRAANELTN ETKINKLLGN TYLQYTPVKG
LTLKSTLNVE MESNKFFFFN PSTATSNINV AIPTTAVSIR QNYQNFSWLN ENLATYNHSF
NEKHNFELLG GVTLQRFRQE FDRITANTYT DDRLPTIQGA INIDRGGSFN VNGISGSNTF
NGANEWALMS YISRLTYNYK GKYLFTAALR ADGSSRFGAD NRWGTFPSAS VGWVISDEDF
MQSIPKVSFA KVRASFGVIG NNNIGNYTQY GLVSNTINIV NGSNVSTGAA ITSLANRNLG
WETTKQFDIG LDVGLLNDRI QLIYDFYTKR TTNLLYAVQV PQESGFSNYN DNIGEIKFWG
HEVGVTTRNL VGKLKWTTNA NISFNRNEVM ELAPGIDRVY GTFHITQVGQ PFGQFYGLVK
EGFYMSKEEV ASSPIIPGRS AIGTIKFKDV NGDKVITNGG DNDDRTIIGS PFPKFTYGIT
NNLSYGNWDL SIVGSGSQGN QLWVRHLYST ANLDGVFNMV AGAKDRFRVK NGPNPLTGKP
EAQTVITPGK GMYGATNNGG NYTGIERDWN SSHFLADASY FTIKNITLGY NLGGINKFFK
SARLYASVQQ VYVFTKYWGG PNPETSAQGD GQGDGGNLSQ GVDLSNYPVP RTWTLGVNLN
F
|
|---|
| |