Gene Dfer_1029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1029 
Symbol 
ID8224599 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1208554 
End bp1211181 
Gene Length2628 bp 
Protein Length875 aa 
Translation table11 
GC content53% 
IMG OID644928890 
ProductDNA gyrase, A subunit 
Protein accessionYP_003085443 
Protein GI255034822 
COG category[L] Replication, recombination and repair 
COG ID[COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 
TIGRFAM ID[TIGR01063] DNA gyrase, A subunit 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.20578 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGAAT CTTCTGGTGA AAACATTATC CCGATTAATA TCGAGGATGA AATGCGTGGA 
GCCTACATCG ACTATTCGAT GTCCGTTATC ATCTCCCGCG CTTTGCCCGA CGTTCGCGAT
GGTCTGAAAC CCGTTCACAG ACGGGTCCTT TATGGAATGG ACGATCTGGG CGTGAGTTAC
AACCGAGCCC ATAAGAAATC AGCGCGTATC GTAGGGGAAG TGCTTGGGAA GTACCACCCC
CACGGCGACT CGTCCGTGTA CAACACGATG GTGCGTATGG CCCAGCCGTG GTCGCTGCGC
TACCCGCTTG TCGACGGCCA GGGTAACTTC GGGTCGGTCG ATGGGGACAA TCCGGCGGCG
ATGCGTTATA CGGAGGCAAG GCTGAAAAGA ATTGCCGATG AGCTGTTGGC CGATCTTAAC
AAGGATACGG TTGATTTTCA ACCCAACTTT GACGACTCGC TGAGCGAGCC TTCGGTACTT
CCGGCAAAAT TCCCCAACCT GCTCGTGAAC GGTTCGTCCG GTATCGCGGT AGGGATGGCC
ACCAACATGG CGCCGCACAA CCTCGGAGAG GTCGTAGACG GCGTGCTCGC TTACATTGAC
AACAACGAAA TCACCATTCC GGAACTGATG GAGCACGTAA AAGCTCCCGA TTTCCCGACG
GGTGGTATCA TTTACGGTTA CAATGGCGTA CGCTCGGCGA TGGAAACCGG CCGCGGAAGC
ATTATTATGC GTTCGAAGGC GCAATTCGAA GTTTCCAAGA CCGGCCGCGA GCAGATCATC
GTCACCGAAA TCCCTTACAT GATCAATAAG GCGGCAATGA TCGAACGGAT CGCGTCGCTG
ATCAATGACA AGAAACTGGA AGGAATTTCC GACATCCGCG ACGAGTCTGA CCGCGAAGGT
ATGCGCATTG TTTTCGACCT GAAAAAAGAT GCGATCCCTA ATATTGTATT GAACCACCTG
TTCAAATACA CGCCGCTGCA AACGTCGTTC GGGGTGAACA ACGTGGCGCT CGTGAAAGGC
CGCCCGGTGT TGCTCAACCT GAAAGATTTG ATCAAGCATT ATGTGGACCA CCGGATTGTG
GTAATTACCC GCCGGACGGA ATACGAATTG CGCGAAGCAG AAAAACGCGC GCACATTCTG
CAAGGCTTGC TGATCGCACT GGATAACCTC GATGCGGTGA TCGCATTGAT CCGCGCAGCC
CGCGATCCTG AAACGGCTAA GACCGGTTTG ATGGAGCAAT TCGAACTGTC GGAAATCCAG
GCGCGCGCGA TCCTTGATAT GCGCTTGCAA CGTTTGACAG GTCTGGAAAG AGAGAAGATC
GTGAAGGAAT ATGAAGAGAT CATGATCCTG ATCGCCGACT TGAAAGACAT TCTGGCCAAC
GAATACCGCA AATACGAGAT CATTAAAACC GAGCTGACCG ACATTAAGGA GCGCTACGGG
GATGCGCGCA GAACGCAGAT CGAATTCTCG GCAGAGGAAT TCAGCGACGA AGACATGATT
GCCGACGAGG AAATGCTCAT TACTATTTCC AAAGAAGGGT ATATCAAACG TACGCCGCTT
TCGGAATACC GCACGCAAAC AAGGGGAGGA GTTGGCTCCC GCGGTGTGAA AACGAAGGAT
ACGGATTTCA CCGAGCACCT GTTCTCCGCG ACAATGCTCA ACTACCTGCT GATCTTCACC
GAATACGGTA AGTTGTTTTG GATGAAGGTG TACGAGGTGC CGGAAGGAAG CAAAACTTCG
AAAGGCCGCC CGATCCAGAA CCTGATCAGC CTCGAAAGCG GCGATTCGAT CCGTTCGGTG
ATCAACGTGA AGACCTTGTC GGATGAGGAT TATATCAACA ATAATTACCT CATTATGTGT
ACCGAGCAGG GCACGATCAA GAAGACCTTG CTCGAAGCTT ACTCACGTCC GCGTACAAAT
GGTATCATCG CCATTTCGAT CAACGAAGGC GACCGCTTGC TGAACGTGGC GTTAACCAAC
GGTGATAACG ACATCGTGAT CGCGTCGGCA GCCGGTAGGG CGGTCCGCTT TAACGAAAAA
GGCGTGCGTC CGATGGGCCG TACAGCGGCC GGTGTGCGTG GTATTAACCT GAACGATCCT
GATAATAAGG TTATCGGCAT GGTTTGTATC AGCCGTGAAG ATGCACAGTT GCTCGTGGTG
TCTGAAAATG GATTTGGAAA GCGCTCTGCG ATAGATAGTT ACCGTGTCAC CAACCGTGGT
GGCAAAGGAG TCTCCACGAT GAATGCGACT GATAAGGTCG GTAAGCTGGT GGCCATTCGC
GAGGTAACCG AAGAGGACGA CCTGATGATC ATCACCCGCA ATGGTATCGC GATCAGAATG
AGCGTACTCG ACATCCGCCA GGCCGGCCGT AACACACAGG GTGTGAAGCT GATCCGCCTG
AGCAGCTCCG ACGAAATCAC TTCGGTGACC CGCATTCTGA AAGATCCGGA CGAAAAAGCC
GAAGAACTGG ACGAAGATGG CAACGTAGTA GCTAAACCGG TAGCGCAGGT TGAAGGTGCT
TCGGCCGATG ATGTAATTGT TTCTGATGAT GAGTTGGACG AGGAAGAAGA TGTCGCTGAC
GACGACGAGG AGGAGGATGA AGAGCCTTCC GACGACGCAG AGGCATGA
 
Protein sequence
MAESSGENII PINIEDEMRG AYIDYSMSVI ISRALPDVRD GLKPVHRRVL YGMDDLGVSY 
NRAHKKSARI VGEVLGKYHP HGDSSVYNTM VRMAQPWSLR YPLVDGQGNF GSVDGDNPAA
MRYTEARLKR IADELLADLN KDTVDFQPNF DDSLSEPSVL PAKFPNLLVN GSSGIAVGMA
TNMAPHNLGE VVDGVLAYID NNEITIPELM EHVKAPDFPT GGIIYGYNGV RSAMETGRGS
IIMRSKAQFE VSKTGREQII VTEIPYMINK AAMIERIASL INDKKLEGIS DIRDESDREG
MRIVFDLKKD AIPNIVLNHL FKYTPLQTSF GVNNVALVKG RPVLLNLKDL IKHYVDHRIV
VITRRTEYEL REAEKRAHIL QGLLIALDNL DAVIALIRAA RDPETAKTGL MEQFELSEIQ
ARAILDMRLQ RLTGLEREKI VKEYEEIMIL IADLKDILAN EYRKYEIIKT ELTDIKERYG
DARRTQIEFS AEEFSDEDMI ADEEMLITIS KEGYIKRTPL SEYRTQTRGG VGSRGVKTKD
TDFTEHLFSA TMLNYLLIFT EYGKLFWMKV YEVPEGSKTS KGRPIQNLIS LESGDSIRSV
INVKTLSDED YINNNYLIMC TEQGTIKKTL LEAYSRPRTN GIIAISINEG DRLLNVALTN
GDNDIVIASA AGRAVRFNEK GVRPMGRTAA GVRGINLNDP DNKVIGMVCI SREDAQLLVV
SENGFGKRSA IDSYRVTNRG GKGVSTMNAT DKVGKLVAIR EVTEEDDLMI ITRNGIAIRM
SVLDIRQAGR NTQGVKLIRL SSSDEITSVT RILKDPDEKA EELDEDGNVV AKPVAQVEGA
SADDVIVSDD ELDEEEDVAD DDEEEDEEPS DDAEA