| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1012 |
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| Symbol | |
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| ID | 8224582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1187723 |
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| End bp | 1190707 |
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| Gene Length | 2985 bp |
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| Protein Length | 994 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644928873 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003085426 |
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| Protein GI | 255034805 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.467602 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAAAAC TATTCAGTTT ATGCCTGGTC TTCCTGGGCC TGGGCGGCTC CGTGCTGGCC
CAAAACGCCA GGATCACGGG AAAAGTGACC GATCAGGACA ATGCAGCGCT CCCCGGTGTG
AGCATCCTGA TCAGCGGCAG CTCGCAGGGC ACCGTTACCG ATGGGGATGG CAATTACGTG
ATCAATGCGC CTGGCAGCGG CACTTTGGTA TTTTCGTTTA TCGGTTATGA AAGTCAAACG
GTCGAGATCG GTAACCGATC GGTTATCGAC ATCAAATTGT CGCAGGGCTC CCGGAGCCTC
GACGAGCTCG TGGTGGTGGG TTATGGTACG CAGCGGAAAA CGGATGTGAC GGGCGCATTA
TCCGTCGTGT CGACGCGTGA ATTCTCCCAG CAGCCCATCA CACGCCTCGA CCAGGTGTTG
CAGGGACGGG CAGCCGGCGT GCAGGTGACG CAATCCAACG GAGCGCCGGG CGGCGATTCC
AAAGTGCGCG TGCGCGGCGC CAACTCGGTA CTGGGCAACA ACGACCCATT GTATGTGATC
GACGGTTTTG TAGGGGCTAA CTATAACCTG TTGAACCCCA ATGACATCGA ATCGCTCCAA
GTACTGAAAG ATGCGGCTTC GACTTCCATT TACGGTAGCC GCGGGGCCAA TGGTGTGATC
ATTATCACCA CCAAAAAAGG CAGCAAAGGC ATTAAAGTAA GCTATGAGGG CCAGGGAAGC
GTTTCGAACG TGATCAAACG GTTCGATATC CTGCCGGCCG GCGAATTTGC CGAAATCGTG
AATGCACGGG CACTCGCTAC CGGCTCCAAT GCGCCGTTCA CGCAGCAGCA GGTGGACGAT
TTCAAAAGAA ACGGCGGCAC CGACTGGCAG GACCTGGTGT ACCGCAAAGG CAGTGGCCAG
CAGCACCAGG TAACCGTTTC CGGTGCGAAC GAGAAAACAT CGTTCCTGAT TTCGGGTAAC
TATGTGAATC AGAAGGGTAT CGTGAACAAC AGTGGTTTCA AACGCTACAT TCTGAGGACC
AATTTAAATA CTCAGATCAA CAAAAACCTG TCGCTTCGCC TGAACCTCTC CGGCGCCAAA
ACGGCCAACC ATAACACCGA TGGCGGCGGA GCGCTGATCG AGGCGCTGCA ATGGGCACCC
ACCACGCCCG CATATGGCGC CGACGGCCAA CCGACCTTTA ACGACCCGAC CGGCTCGGTG
AGCCGAAGCC CGCTGGATCA TTTGTACGAC AAATCCATCG ACACCGAGCG CATGAACATC
AATGCCATCG GCGGACTCAC TTACCAACTT CCGATCCAGG GCCTTTCGCT CGACCTGCAA
TATGCGATCA ACTATCTCGA CGCGCAGAAC AAGAATTTCA ACGGCAAGCG CCTTTCGAAC
AACAACCCGA ATGCGACGCG CTACTCTTCC GACCAGGTGA CTTTGCAGAA TACCAATGCA
TTGAACTACA ACCGCACCTT CGGTAACCAT TCCATTACCG CAGTGGCCGT GCTGGAAACG
CAGCAGTTTA CCGATAAGAA CTTTACCGCC ACCGCCAATG GCCTGCGTTT CCCGCAGCTG
GGCTACGACA ACATTGGCGG TAACTCGGCC GCGACGGTCA ATTCGGCATT CTCCAAATGG
ACATTGCTCT CGCTGCTCGG CCGTGTGAAC TACGCATTCA AAGACAAATA CCTGATCACC
GCCGCCATTC GCCGCGATGG TTCCTCCAAA TTTGCGAAGG ACAACCGAAA CAGCGTATTC
CCGTCGGTAG CGGTAGGCTG GCGGCTTTCG GAGGAGGAGT TTATCAAAAA TCTCAACGTT
TTCTCGAACC TGAAACTTCG GGGGAGCTGG GGGAAAACCG GCAGCCAGGC TATCAGCCCC
TATGCAACGC TCTCGCCTTA CAACTCTACA CAGGTGGGCT TCAACAACAC AGCGGTAACG
GCCGGTGTGA TCCAGGGCAA CCAGGGCAAC CGGAATCTCA AATGGGAAAC CACCACGCAA
ACCGACGTAG GTATCGAAAT GGAATTCCTC AATGGCAGAC TGCATGTGGA AGCGGATTAT
TTCAACAAAC GCACCACCGA CCTGCTGCTG AACGTGCAGC TGCCGAACTA TGCCGGCGGC
GGCACGCAGA CGCGCAACGT GGGAGAGATC AAAAACACGG GATTTGAGTT CGCGATCGGC
GGTACACCCA TTGAAAAAGG CAAGTTTAGC TGGGAAACAA ACCTGAACAT TTCTACCCTC
AAAAACGAGG TGGTAAGCCT GGGCGGCCTG CCGCGGCTTG GAACAGGAAC GGGCGCGGGC
GGTGGTATGT CTATCACCAA CGAATTTATG CTCATGCCCG GCCAGTCGCT CGGTTCTTAC
TGGGGATTGA AATACCTGGG CACATTTAAA CCGGACGAAG CCGATATCGC TGCCAAGCAG
GGACGCGTGC CTGGCGACCC GCATTATGAG GATGTGAATG GCGACAATGC GATCACCACC
GACGACTTCC AGATCGTAGG CCGGGCGTTC CCGCGCATGA CGGGCGGTTG GAATAACACC
TTCACTTATG GCGGCTTAAC GCTCAATGTG TTCTTCCAAG GTGCTTTCGG AGTGGATAAA
CTGAACTATA CCCGTGCCGG CGCCATGTCG GGCTCGGGCG AGGCGAGGCA GTTCCTGCTG
ACGGAAATCC GCGACTACTA CCGGCCGGGC AATGAGGATT CGGACATTCC TGCATTCACC
AAAACGTACC AGCCATTCAC ACAATCGAGC CGGTTTGTCG AAAACGGAAG TTTTGTGCGG
TTGAAAAACG TCAGTCTGGC TTACACGGTG CCATCTGTTT TCAAAGACAA GGCGAACATC
CGCATCTTCG CCAGCGCGAC CAACCTGCTC ACGATCACCA AATACACCGG CCCGGACCCC
GAAACAAGCA ACGTAGGTTC CAGCACGGAC ACCGCAATCG GCATCGACCG CGGCTCCTAC
CCGAATGCGA AGGTGTATAC GCTGGGGCTG ACGTTGGGAT TTTAG
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| Protein sequence | MRKLFSLCLV FLGLGGSVLA QNARITGKVT DQDNAALPGV SILISGSSQG TVTDGDGNYV
INAPGSGTLV FSFIGYESQT VEIGNRSVID IKLSQGSRSL DELVVVGYGT QRKTDVTGAL
SVVSTREFSQ QPITRLDQVL QGRAAGVQVT QSNGAPGGDS KVRVRGANSV LGNNDPLYVI
DGFVGANYNL LNPNDIESLQ VLKDAASTSI YGSRGANGVI IITTKKGSKG IKVSYEGQGS
VSNVIKRFDI LPAGEFAEIV NARALATGSN APFTQQQVDD FKRNGGTDWQ DLVYRKGSGQ
QHQVTVSGAN EKTSFLISGN YVNQKGIVNN SGFKRYILRT NLNTQINKNL SLRLNLSGAK
TANHNTDGGG ALIEALQWAP TTPAYGADGQ PTFNDPTGSV SRSPLDHLYD KSIDTERMNI
NAIGGLTYQL PIQGLSLDLQ YAINYLDAQN KNFNGKRLSN NNPNATRYSS DQVTLQNTNA
LNYNRTFGNH SITAVAVLET QQFTDKNFTA TANGLRFPQL GYDNIGGNSA ATVNSAFSKW
TLLSLLGRVN YAFKDKYLIT AAIRRDGSSK FAKDNRNSVF PSVAVGWRLS EEEFIKNLNV
FSNLKLRGSW GKTGSQAISP YATLSPYNST QVGFNNTAVT AGVIQGNQGN RNLKWETTTQ
TDVGIEMEFL NGRLHVEADY FNKRTTDLLL NVQLPNYAGG GTQTRNVGEI KNTGFEFAIG
GTPIEKGKFS WETNLNISTL KNEVVSLGGL PRLGTGTGAG GGMSITNEFM LMPGQSLGSY
WGLKYLGTFK PDEADIAAKQ GRVPGDPHYE DVNGDNAITT DDFQIVGRAF PRMTGGWNNT
FTYGGLTLNV FFQGAFGVDK LNYTRAGAMS GSGEARQFLL TEIRDYYRPG NEDSDIPAFT
KTYQPFTQSS RFVENGSFVR LKNVSLAYTV PSVFKDKANI RIFASATNLL TITKYTGPDP
ETSNVGSSTD TAIGIDRGSY PNAKVYTLGL TLGF
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