| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1008 |
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| Symbol | |
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| ID | 8224578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1182760 |
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| End bp | 1184112 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644928869 |
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| Product | Mandelate racemase/muconate lactonizing protein |
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| Protein accession | YP_003085422 |
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| Protein GI | 255034801 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.570237 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.309423 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGAGA ACGGAATGAG TCGTCGCGAT ACGATGCGGG CACTGGGGTT GAGCGGCTCC
GCGGGCCTGC TGGGCCTGTT CGGAGGCATT CCCAATGCCC TCGCCGCCGA CCGCGAAACA
CCTCAGTACG CCAAAGCGAT GAAACCCGTG ACGATCAAAA GCGTTCGAGC GATTGCCACG
GCGCCGCAGG GTTCCAATCT CATCGTGGTG AAAGTCGAAA CGTCGGAACC AGGCCTGTAC
GGGCTCGGCT GCGCCACATT CACGCAGCGC GCGGAAGTGG TGCTGGTGGC GATCAACACG
TATCTCAACG AATTCTGTGC GGGTAAGGAC GTCGATAACA TCGAGGATAT GTGGAATGCG
GCCTACGTGA GCTCCTACTG GCGCAATGGC CCTGTGCTCA ACAATGCATT GAGCGGTCTC
GACCAGGCTT TGTGGGATAT CAAGGGAAAA CGTGCCGGAA TGCCGCTTTA CCAGCTGCTG
GGCGGAAAAT CGCGCTTCGC CGTGCCTTGC TACACGCATG CGAACGGCCG CACGCCCGAG
GAGGTGGTTG AAAGCGTGAA AAAGATCCAG GAACAGGGCT ACCGCTACAT CCGCATTCAG
CAGGGCGGTT ACGGGGCGGT CGGCAGCACC ACCAAAAAGC CCGATTTCAA GGAAGCGGGC
TTCGGCGGGC CTACCGATAA TTACATGGAC GAGAATGCTT ACCTCAAAGC TATTCCGATC
CTCTTCGAAA CCGTGCGGAA ACAATGCGGC GATGAGGTGG AATTGCTGCA CGACATTCAC
GAACGCGTGC AGCCGATGAA TGCGATCAAT ATGATCAAAA AGCTGGAAGA TTACCGTCCA
TTCTTCATCG AAGACCCGTT TTCTCCCGAA AATATGAAGT GGTTCAAACT CTTGCGCCAA
AGCACTACCG TGCCGCTGGC TATGGGTGAG CTTTTCAACA ACATCAACGA GTTCCTGGAA
CCGATGGTGA ACCAATGGTT CGACTACATC CGCATCCACG TGTCACAAAT CGGCGGCATT
ACGCCAGCCA TGAAAGTGGC GCGGCTCGGC GAGTGGTTCA ATGTGAGAAC GGCCTGGCAC
GGCCCGGGCG ACGTGTCGCC GGTAGGCCAC TCGGCCCATG CGCATATCGA CCTCACGGTG
TGGAACTTCG GGATTCAGGA GGCGGTGCAG TTCAATGAGA AAACACTGGA AGTATTTTCG
GGCTGTCCTA CCATGAAAAA CGGCTACATG TCGGTGAACG AAGTGCCGGG CATCGGCGTG
GATATCAACG AGAAAGCCGC TGCCAAATTC CCGATTACCA CGAAATCCAA CTGGCAAGTA
AGAAAATTTG ACGGTACGCT AATACGTCCA TGA
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| Protein sequence | MKENGMSRRD TMRALGLSGS AGLLGLFGGI PNALAADRET PQYAKAMKPV TIKSVRAIAT
APQGSNLIVV KVETSEPGLY GLGCATFTQR AEVVLVAINT YLNEFCAGKD VDNIEDMWNA
AYVSSYWRNG PVLNNALSGL DQALWDIKGK RAGMPLYQLL GGKSRFAVPC YTHANGRTPE
EVVESVKKIQ EQGYRYIRIQ QGGYGAVGST TKKPDFKEAG FGGPTDNYMD ENAYLKAIPI
LFETVRKQCG DEVELLHDIH ERVQPMNAIN MIKKLEDYRP FFIEDPFSPE NMKWFKLLRQ
STTVPLAMGE LFNNINEFLE PMVNQWFDYI RIHVSQIGGI TPAMKVARLG EWFNVRTAWH
GPGDVSPVGH SAHAHIDLTV WNFGIQEAVQ FNEKTLEVFS GCPTMKNGYM SVNEVPGIGV
DINEKAAAKF PITTKSNWQV RKFDGTLIRP
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