Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_0980 |
Symbol | |
ID | 8224550 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 1139605 |
End bp | 1141038 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644928841 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_003085394 |
Protein GI | 255034773 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0000129951 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.889161 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAAATA AGAAAATATT GAACTGGGCC GGGATCGCGT TCATCGGGCT GACTTACTCG GCCTGCAACA TCCCGACATT ACCCCAGAAA ACGGAAAATA AAGTGGTACC TGTGAGCTTC AACGGCTCAC AGGATTCCAC CAACGCCGCC AAAGTATCCT GGAAATCCTT TTTTACAGAT CCTAACCTGA ATGCGCTGAT CGACACCGCA TTCAGGAACA ACCAGGAATT GAACATTACG ATGCAGGAAA TCGCGATTTC GCAGAACGAG ATCGGCGCCC GCAAAGGGGA ATACCTGCCG TTTATAGGCC TGCGCGGCGG TGCGGGAGTG GAAAAAGCGG CGCGCTACAC GAATATTGGC GCGAGCGAAG CCACCACGGA CATTAAACCC GGCAGAGAAA CGCCGGAACC GCTGCCCGAC GTGAACATCC AGGCCGTGGC GCGCTGGGAG GTGGATATAT GGCACAAGCT GCGCAATGCA AAAAAAGCAG CGGCAACGCG GTATTTATCG TCGATTGAAG GGAAAAATTT CATGATGACG AACCTGGCGG CGGAAATCGC GAACTCCTAC TATGAGCTGC TCGCGCTGGA CACCCAGCTG GCCATTATCC GCCAGAATGT GGATATTCAG ACCAATGCAT TGAAGATCGT TAAAATGGAG AAAGAGGCTA CCCGCGTTAC CGAGCTGGCT GTGAAGCGGT TCGAGGCGCA GGTTTTGAAA ACACAAAACC TTCAATACGG CATTCAGCAG CGTATTGTGG AAACTGAAAA CCGCATTAAT TTTCTCGTAG GCCGTTATCC GCAGCCGGTG CAGCGCAGCC AGTCGGGATT TGAAAACCTC GTTCCGAATG TGGTGCAGGC CGGTATCCCG TCGCAATTGC TCTCCAACCG CCCGGACATC CGTCAGGCGG AACTCGACCT GGAAGCGGCG AAGATCGACG TGAATGTGGC GCGAGCTAAT TTCTACCCCT CACTGGGATT ATCGGCAAGT CTTGGTTTGC AGGCGTTCAG CCCGATTTAT CTGGCGCGTG TGCCGGAGTC GATCGTGGGA TCGCTGATCG GCGACCTCGC CGCGCCTGTG ATTAACCGCT ACGCCATCCG CGCCGGTTAT GCTAATGCCA ATGCACGCCA GATCCAGGCC ATTTACAACT ACGAGCGTAC CGTGCTGAAT GCTTACATCG AGGTCGTAAA TCAGCTTTCG AACATCAATA ACCTCGAAAA GAGCTACGAC CTGAAAACGA AGGAAGTGGA TGCATTGAAC CAGTCGACCA CCATTTCGAA CCGGCTGTTC GCCTCGGCGC GCGCCGATTA TATGGAAGTG CTCCTCACGC AGCGCGACGC ACTGGAATCG AGATTTGAAC TGATCGAAAC CAAAATGCGC CAGATGAATG CCATGGTGAA TATTTACCGG GCACTCGGGG GCGGCTGGAA TTGA
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Protein sequence | MRNKKILNWA GIAFIGLTYS ACNIPTLPQK TENKVVPVSF NGSQDSTNAA KVSWKSFFTD PNLNALIDTA FRNNQELNIT MQEIAISQNE IGARKGEYLP FIGLRGGAGV EKAARYTNIG ASEATTDIKP GRETPEPLPD VNIQAVARWE VDIWHKLRNA KKAAATRYLS SIEGKNFMMT NLAAEIANSY YELLALDTQL AIIRQNVDIQ TNALKIVKME KEATRVTELA VKRFEAQVLK TQNLQYGIQQ RIVETENRIN FLVGRYPQPV QRSQSGFENL VPNVVQAGIP SQLLSNRPDI RQAELDLEAA KIDVNVARAN FYPSLGLSAS LGLQAFSPIY LARVPESIVG SLIGDLAAPV INRYAIRAGY ANANARQIQA IYNYERTVLN AYIEVVNQLS NINNLEKSYD LKTKEVDALN QSTTISNRLF ASARADYMEV LLTQRDALES RFELIETKMR QMNAMVNIYR ALGGGWN
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