Gene Dfer_0980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0980 
Symbol 
ID8224550 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1139605 
End bp1141038 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content54% 
IMG OID644928841 
ProductRND efflux system, outer membrane lipoprotein, NodT family 
Protein accessionYP_003085394 
Protein GI255034773 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000129951 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.889161 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAAATA AGAAAATATT GAACTGGGCC GGGATCGCGT TCATCGGGCT GACTTACTCG 
GCCTGCAACA TCCCGACATT ACCCCAGAAA ACGGAAAATA AAGTGGTACC TGTGAGCTTC
AACGGCTCAC AGGATTCCAC CAACGCCGCC AAAGTATCCT GGAAATCCTT TTTTACAGAT
CCTAACCTGA ATGCGCTGAT CGACACCGCA TTCAGGAACA ACCAGGAATT GAACATTACG
ATGCAGGAAA TCGCGATTTC GCAGAACGAG ATCGGCGCCC GCAAAGGGGA ATACCTGCCG
TTTATAGGCC TGCGCGGCGG TGCGGGAGTG GAAAAAGCGG CGCGCTACAC GAATATTGGC
GCGAGCGAAG CCACCACGGA CATTAAACCC GGCAGAGAAA CGCCGGAACC GCTGCCCGAC
GTGAACATCC AGGCCGTGGC GCGCTGGGAG GTGGATATAT GGCACAAGCT GCGCAATGCA
AAAAAAGCAG CGGCAACGCG GTATTTATCG TCGATTGAAG GGAAAAATTT CATGATGACG
AACCTGGCGG CGGAAATCGC GAACTCCTAC TATGAGCTGC TCGCGCTGGA CACCCAGCTG
GCCATTATCC GCCAGAATGT GGATATTCAG ACCAATGCAT TGAAGATCGT TAAAATGGAG
AAAGAGGCTA CCCGCGTTAC CGAGCTGGCT GTGAAGCGGT TCGAGGCGCA GGTTTTGAAA
ACACAAAACC TTCAATACGG CATTCAGCAG CGTATTGTGG AAACTGAAAA CCGCATTAAT
TTTCTCGTAG GCCGTTATCC GCAGCCGGTG CAGCGCAGCC AGTCGGGATT TGAAAACCTC
GTTCCGAATG TGGTGCAGGC CGGTATCCCG TCGCAATTGC TCTCCAACCG CCCGGACATC
CGTCAGGCGG AACTCGACCT GGAAGCGGCG AAGATCGACG TGAATGTGGC GCGAGCTAAT
TTCTACCCCT CACTGGGATT ATCGGCAAGT CTTGGTTTGC AGGCGTTCAG CCCGATTTAT
CTGGCGCGTG TGCCGGAGTC GATCGTGGGA TCGCTGATCG GCGACCTCGC CGCGCCTGTG
ATTAACCGCT ACGCCATCCG CGCCGGTTAT GCTAATGCCA ATGCACGCCA GATCCAGGCC
ATTTACAACT ACGAGCGTAC CGTGCTGAAT GCTTACATCG AGGTCGTAAA TCAGCTTTCG
AACATCAATA ACCTCGAAAA GAGCTACGAC CTGAAAACGA AGGAAGTGGA TGCATTGAAC
CAGTCGACCA CCATTTCGAA CCGGCTGTTC GCCTCGGCGC GCGCCGATTA TATGGAAGTG
CTCCTCACGC AGCGCGACGC ACTGGAATCG AGATTTGAAC TGATCGAAAC CAAAATGCGC
CAGATGAATG CCATGGTGAA TATTTACCGG GCACTCGGGG GCGGCTGGAA TTGA
 
Protein sequence
MRNKKILNWA GIAFIGLTYS ACNIPTLPQK TENKVVPVSF NGSQDSTNAA KVSWKSFFTD 
PNLNALIDTA FRNNQELNIT MQEIAISQNE IGARKGEYLP FIGLRGGAGV EKAARYTNIG
ASEATTDIKP GRETPEPLPD VNIQAVARWE VDIWHKLRNA KKAAATRYLS SIEGKNFMMT
NLAAEIANSY YELLALDTQL AIIRQNVDIQ TNALKIVKME KEATRVTELA VKRFEAQVLK
TQNLQYGIQQ RIVETENRIN FLVGRYPQPV QRSQSGFENL VPNVVQAGIP SQLLSNRPDI
RQAELDLEAA KIDVNVARAN FYPSLGLSAS LGLQAFSPIY LARVPESIVG SLIGDLAAPV
INRYAIRAGY ANANARQIQA IYNYERTVLN AYIEVVNQLS NINNLEKSYD LKTKEVDALN
QSTTISNRLF ASARADYMEV LLTQRDALES RFELIETKMR QMNAMVNIYR ALGGGWN