| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0903 |
|---|
| Symbol | |
|---|
| ID | 8224472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 1062505 |
|---|
| End bp | 1064586 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644928767 |
|---|
| Product | sigma54 specific transcriptional regulator, Fis family |
|---|
| Protein accession | YP_003085321 |
|---|
| Protein GI | 255034700 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.10284 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAGT TTTCCAATAC GATCTTCAAT AAAGAAATCC TTGATAAGGA GCATGAAAAG
TCATTCCTGC TCGATTTTAG CAATGATATG ACCGCTGTTC GGAGCAGGGA AGATCTGGCT
ATTGTCGTGA ACAAAGCATT GCGAAAGCTC AACCCTGACG GAGGTTATGT GATCCGCAAG
ATCAATGAAG ATGGCGCGAC TATGTCAGCC TACCTGTACA ATACCGGCGC TTCTGCATTC
GATCCGGCAT TGTTGGAGCA GGTGCTTGCA GAAAAGTACC CGATCAACGA CGGCCTGCAA
AACCGCATCC TGGATAGCGC CGTTCCGCTG CTTTTCAATG TGAGAATTGA ATTACAGCGC
GGCTATAACC TGTCGTACCT GGATCTTTGG GAGAATATGG GTTTCAAAAC AATGGTTGGC
ATTGCATTGC GGAACGGCAA CACTAACATC GGCCTGCTCT GGCTGAGCAT TGACGAAATC
AATATTCCGA TCCTGCAAGG CATCTGCTCG CAAATTGCCA TCGCGATGGG CAACATCATG
GCCAACGAGG ACATTTTTCG CCGCCAGGCT GAGCAGGAAT TGATGCTAGG ATTTTCCAGC
GATATTACTG GTGTCAAAAC GAAGTCTGAC CTGGAAATTG TGACGTCCAA GACGTTGGAG
CGCCTTTTTA ACACGAGGAT TTCTGTATTG TATCTGCTGG ACACAGATCA GGTCACGCTC
CGGCCATACC TATACGATCG GCAGTTTTTC CAGGAAACTG AGGTCGCAGA GAACGAAGCG
TTTTATTCTT TAAATATCAA TGAAGAGCAT GTAAAACTGG TTTTCGAAAG CAGCCAGCCG
GTCTTGCTGG ACATTGATGA AAATCTGGAA GCAAAGTGCC TTAAACTCTC GATCCAGCGT
GAGCTTTCGG GCTTCAATCG CGTCTATGCA TCGGCGCTAA GGCTGGGAGA ACAAAAGCTG
GGCATGGTTT GGATGTTGGG TGACCAGGTC AGCGGGCCGA TTTTGCAAGG TATTTGCGCT
CAGATTTCGA CGGCGGTTTC CAATGTCCTG GCCAATGAAC AAATCCTGCG TTTGCAAAAG
CAGCTGGAAG ACGAAAATCA TTATCTTAAA CAGCAGCTCA ACAAGGATTT TGAAGAAATT
GTGGGCGGCG GCGAGGCCAT GCAGCAGGTG TACCGCCTGA TTTCCCTGGT GGCTGAAAGT
AATGCGACAG TGCTGCTGCT GGGCGAGACG GGTACTGGCA AGGAGCTGAT CGCAAAGGCG
GTACATCATA CGTCTGCCCG GAAAGATAAG CTGATGATCA AGGTCAACTG CGCGGCCATG
CCCGCCAGCC TGATCGAGAG CGAGCTGTTT GGCCATGAGC GCGGCGCATT CACGGGGGCT
GTGGAGCGGC GTATCGGAAA GTTCGAACTG GCCAACAACA GCACGCTGTT CCTGGACGAG
GTGGGTGAAA TGCCGATGGA AACCCAGGTG AAGTTGCTGC GGGTCTTGCA GGAAAAGGAA
ATGGAACGTG TGGGCGGCAA AACGACCATT AAACTGAATG TCCGGATCAT TGCGGCCACC
AACCGCGACC TGGAAGCGGA GGTGAAAGCG GGCCGGTTCC GTTCAGATCT GTATTATCGC
CTGAATGTAT TTCCTATCAA CCTACCACCG CTTCGCGACC GCCGCGAGGA TATCGAAAGC
CTTGCCGGAT TTTTCCTAGC TAAATTCAGC AAAAGCATCG GCAAGAAAAC CGTGAAGCTA
TCCGCCAATG CATTGCGGCA GTTGCAGGCC TATTTGTGGC CCGGCAATGT GCGCGAACTC
GAACACCTCA TCGAGCGCTC GGTGATCCTG GCCACCGACC CTATGATCCG CGAGTTCTTC
TTACCGCAGG CAACAGGGGC AACGACCGAT GAGCACACAA TGCAATCCGA TTTAACATTG
GAACAAGTCG AGCGCATGCA CATCATACAG GTATTGCGCC GGTGCGGGGG TAAGATTTCC
GGTATTGGAG GTGCCGCAGA AATACTGGGC ATTCCCGGGA ATACCATTCA TTCGAAAATG
CGCAAGCTGG GCATCACCAA GGCGGAGTAC TTCGCTAATT AA
|
|---|
| Protein sequence | MKQFSNTIFN KEILDKEHEK SFLLDFSNDM TAVRSREDLA IVVNKALRKL NPDGGYVIRK
INEDGATMSA YLYNTGASAF DPALLEQVLA EKYPINDGLQ NRILDSAVPL LFNVRIELQR
GYNLSYLDLW ENMGFKTMVG IALRNGNTNI GLLWLSIDEI NIPILQGICS QIAIAMGNIM
ANEDIFRRQA EQELMLGFSS DITGVKTKSD LEIVTSKTLE RLFNTRISVL YLLDTDQVTL
RPYLYDRQFF QETEVAENEA FYSLNINEEH VKLVFESSQP VLLDIDENLE AKCLKLSIQR
ELSGFNRVYA SALRLGEQKL GMVWMLGDQV SGPILQGICA QISTAVSNVL ANEQILRLQK
QLEDENHYLK QQLNKDFEEI VGGGEAMQQV YRLISLVAES NATVLLLGET GTGKELIAKA
VHHTSARKDK LMIKVNCAAM PASLIESELF GHERGAFTGA VERRIGKFEL ANNSTLFLDE
VGEMPMETQV KLLRVLQEKE MERVGGKTTI KLNVRIIAAT NRDLEAEVKA GRFRSDLYYR
LNVFPINLPP LRDRREDIES LAGFFLAKFS KSIGKKTVKL SANALRQLQA YLWPGNVREL
EHLIERSVIL ATDPMIREFF LPQATGATTD EHTMQSDLTL EQVERMHIIQ VLRRCGGKIS
GIGGAAEILG IPGNTIHSKM RKLGITKAEY FAN
|
|---|
| |