Gene Dfer_0899 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0899 
Symbol 
ID8224468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1058071 
End bp1059546 
Gene Length1476 bp 
Protein Length491 aa 
Translation table11 
GC content47% 
IMG OID644928763 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003085317 
Protein GI255034696 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0517319 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCATTT GCTTTTGCGA TGCTACCGGG ACAATCACTT ACGGCAATGC CATGTCGCAA 
GTGCTTTGGG GCGCAGAGGG CATTCCGTCA CAGAAATTCT GTGGTTCTCA CCGTCTTTTA
AATGCCGACG GCTCATTGTT GCTTTTTGAA GATTCGCCCG TTGCTATCTG CCTTAGAGAA
AACCGTCCGG TTGCGGGTTT TGACCTTACT ATGGAGCGGC GCGACGGTTC GGTGACCAAT
GTCAGCTCCA ATGTGTCCCC AGTTTATAAC AATGCCGGTG ATCTGCTCGG GGCAGTTAAT
TGTTTCCACG AAAACACGAG CCAAAATGCG GCCCAGCAAG CGCTTAGCAG AAAAACTTTT
GAGTTGCAGG AGTACATCGA CAATGCTTCT ATAGGTCTGC ATTGGGTCGA CCATCAGGGC
ATTATCAAAT GGGCAAACCA GGCGGAGCTT GACATGCTGG GCTACACGCG TGAAGAATAT
GTAGGGCATC ATATTTCAAC TTTCCATCTG CACCTTGACA AAATCAATGA TATTCTCAGG
CGCTTGCAAG AGGACGAGGT CCTGAATCAA TACGAATCGG AAATGGTCTG TAAAGACGGA
AGCATCCGTG TTGTACACAT CAGTTCGAGT GTTTTTCGTC AGGACGGCCA GTTTGTTCAC
ACCCGATGTT TCACCGTTGA TGTAACAACC GTCAAACAGG CCGAATTGCA ACTCATGGCC
GACCAGCTAC AAATTATGAA TAAAAAGCTC GAAAAGTCGA ACAAGGAGTT GCAGGATTTT
GCCTATGTGG CCAGCCATGA TTTGCAGGAA CCTTTACGTA AAATAACCGC GCTCGGCACA
TTGCTTGTTA ACAGGCATTC TCATGCGCTT AGCCCGGATG GAACAAACCT GGTGATCAGA
ATGCAGGCCG CATCCAATCG CATGAATATT TTGATCGAGG ACTTGCTGCA CTTGTCGCAA
GTGTCCAGTG TGAAAGAGAA GACGCGCGTT AATCTGCACG AAGAAATCAA TGGGGTTTTG
ATGGATCTGG AATCGGCGAT CACGGCAAAA GGTGCCGAGA TACATCTGGA AGATCTTTAT
CCAATGAATG GATATGCTCC GCAAATCAGG CAGCTATTTC AGAATTTAAT CGGGAATGCA
TTAAAATTCA GCCGTCCAGG AGCAGCGGTA GTTGTTCGTA TATCCTCGCA GCTTGTAAGG
GGCGCTGATA GTGGTTTCCG TTTGTTTGGG CTGGAAGCCG AAAAACAGTT CCAGCTGATT
GAAATCAAAG ACAACGGTAT AGGTTTCGAA CCAAAATATG CACAAGATAT CTTCGAGGTA
TTTCGGCGTT TGAACGGCAA ACACGAATTC GCTGGAACTG GGATCGGCTT ATCTATTGTG
AAGAAAGTTA TCGAAAATCA CCAAGGCCAT ATCCTTGCAG AGGGGCGCAA AGGGGATGGC
GCGACATTTC GGATATTGCT GCCAACGTTG GAATAA
 
Protein sequence
MGICFCDATG TITYGNAMSQ VLWGAEGIPS QKFCGSHRLL NADGSLLLFE DSPVAICLRE 
NRPVAGFDLT MERRDGSVTN VSSNVSPVYN NAGDLLGAVN CFHENTSQNA AQQALSRKTF
ELQEYIDNAS IGLHWVDHQG IIKWANQAEL DMLGYTREEY VGHHISTFHL HLDKINDILR
RLQEDEVLNQ YESEMVCKDG SIRVVHISSS VFRQDGQFVH TRCFTVDVTT VKQAELQLMA
DQLQIMNKKL EKSNKELQDF AYVASHDLQE PLRKITALGT LLVNRHSHAL SPDGTNLVIR
MQAASNRMNI LIEDLLHLSQ VSSVKEKTRV NLHEEINGVL MDLESAITAK GAEIHLEDLY
PMNGYAPQIR QLFQNLIGNA LKFSRPGAAV VVRISSQLVR GADSGFRLFG LEAEKQFQLI
EIKDNGIGFE PKYAQDIFEV FRRLNGKHEF AGTGIGLSIV KKVIENHQGH ILAEGRKGDG
ATFRILLPTL E