Gene Dfer_0890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0890 
Symbol 
ID8224459 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1050286 
End bp1051596 
Gene Length1311 bp 
Protein Length436 aa 
Translation table11 
GC content47% 
IMG OID644928755 
Productintegrase family protein 
Protein accessionYP_003085309 
Protein GI255034688 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.304857 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.483711 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGCA ATCAGAAACT TTCGATCCTC TTCTGGCTAT TCAAAGCCAA AGCAACCAAA 
GACGGCAAAG CGCCGATCTA TGTCCGGATT ACCATCGACG GCCTCGATGA CGAAATCTCC
CTCGGCAAAA AAGTGCACCC CTATGACTGG TGCAACCAAA CCAAAAAGGT TACTGCGTCA
GGCATGGAAG CCAAACTGAT CAACATTGCT ATTGATCAGG CGCGCGCCTC GCTGACATCC
CAATTCATGG TGCTGCAATC GCAGTTTGAA TGTATCACGC CTACGATGCT CAAAAACGTC
TACAAAGGCA AACCGGTCGA AGACAAAGTC GATGCTCCCC AGCCAGGATC GAAGAAGCAG
CAGACCCTGC TTCAAGCTTT CGACGAACAC ATCGAGAAAT TCGAATTAAT GGTCGAGCGT
GGAATGCGTT CGGACAACAC ACTGCGACAT TGGCGAAAAC TTAAAAGACA TGTTACAGCT
TTCATCAAGT TTCAGTACAA AGCATCTGAC CTGAATTTTT CAGAGTTATC TGGTCTGTTT
GCCGAAGAGC TCTACGAATA CCTGACGCTT CACAAGCCCA AACCGCTCGC TGAGGTATCT
GCTCGCAAGG ACGTGAAATG GACCAGGCAG ATAGTAAAAA TCGGTGTCAA GAAGGATTTC
ATAACACGCA ACCCGATGGA AGGTTTTAAA TGCTCGGGCG GTGATGTTGA GGTGATTCCG
TTAGAGTTTG AACAGGTTGA AAGAATTCAT CGAAAGAAAT TGCATGTTGA ACGGCTAGTT
GAAGTGCGAG ACGCCTTTAT TTTTCAGTGC TTCACCGGCT TTGCCTATCA GGACATCTAC
GGACTCACAC GGGATAGCAT AACACTTGTT GGCCCAAAGA GGGAAAGATG GCTTGTCCGG
AAACGCGGGA AAACACAGGT TGGCGAAATG GTACCGATAC TGCCAATTGT CGAGGAGCTG
ATTCAAAAGT ATAAGTCCCA TCCCTATTGC GTGGCCCACG ATAAGCTGAT CCCAGTGAAC
AGCAATTTCC GATACAACAC CTATTTGAAG GAGTTAGCGG ACATCTGTGA TATTCGTGAC
ATCACGGGAA GTATCAGAAA ACTAGATACT CATGATGCCA GGCATTTCTT TGCAGATATG
ATGCTGAACA ACGGCGTGCC CTTAGAAGAC GTAAGCAAGA TGCTTGGTCA CAGAAATATC
CGGACCACGA TGCGTTATTG TCGCGTAAGG AAATCGCGCA TCAGCGAAAA TGTAGGACTG
GTAAGAGATC GGTTGTTTAC TAAAACCGGA AAGCTCCGAC AACCATCCTA A
 
Protein sequence
MKSNQKLSIL FWLFKAKATK DGKAPIYVRI TIDGLDDEIS LGKKVHPYDW CNQTKKVTAS 
GMEAKLINIA IDQARASLTS QFMVLQSQFE CITPTMLKNV YKGKPVEDKV DAPQPGSKKQ
QTLLQAFDEH IEKFELMVER GMRSDNTLRH WRKLKRHVTA FIKFQYKASD LNFSELSGLF
AEELYEYLTL HKPKPLAEVS ARKDVKWTRQ IVKIGVKKDF ITRNPMEGFK CSGGDVEVIP
LEFEQVERIH RKKLHVERLV EVRDAFIFQC FTGFAYQDIY GLTRDSITLV GPKRERWLVR
KRGKTQVGEM VPILPIVEEL IQKYKSHPYC VAHDKLIPVN SNFRYNTYLK ELADICDIRD
ITGSIRKLDT HDARHFFADM MLNNGVPLED VSKMLGHRNI RTTMRYCRVR KSRISENVGL
VRDRLFTKTG KLRQPS