Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_0890 |
Symbol | |
ID | 8224459 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 1050286 |
End bp | 1051596 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644928755 |
Product | integrase family protein |
Protein accession | YP_003085309 |
Protein GI | 255034688 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.304857 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.483711 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGCA ATCAGAAACT TTCGATCCTC TTCTGGCTAT TCAAAGCCAA AGCAACCAAA GACGGCAAAG CGCCGATCTA TGTCCGGATT ACCATCGACG GCCTCGATGA CGAAATCTCC CTCGGCAAAA AAGTGCACCC CTATGACTGG TGCAACCAAA CCAAAAAGGT TACTGCGTCA GGCATGGAAG CCAAACTGAT CAACATTGCT ATTGATCAGG CGCGCGCCTC GCTGACATCC CAATTCATGG TGCTGCAATC GCAGTTTGAA TGTATCACGC CTACGATGCT CAAAAACGTC TACAAAGGCA AACCGGTCGA AGACAAAGTC GATGCTCCCC AGCCAGGATC GAAGAAGCAG CAGACCCTGC TTCAAGCTTT CGACGAACAC ATCGAGAAAT TCGAATTAAT GGTCGAGCGT GGAATGCGTT CGGACAACAC ACTGCGACAT TGGCGAAAAC TTAAAAGACA TGTTACAGCT TTCATCAAGT TTCAGTACAA AGCATCTGAC CTGAATTTTT CAGAGTTATC TGGTCTGTTT GCCGAAGAGC TCTACGAATA CCTGACGCTT CACAAGCCCA AACCGCTCGC TGAGGTATCT GCTCGCAAGG ACGTGAAATG GACCAGGCAG ATAGTAAAAA TCGGTGTCAA GAAGGATTTC ATAACACGCA ACCCGATGGA AGGTTTTAAA TGCTCGGGCG GTGATGTTGA GGTGATTCCG TTAGAGTTTG AACAGGTTGA AAGAATTCAT CGAAAGAAAT TGCATGTTGA ACGGCTAGTT GAAGTGCGAG ACGCCTTTAT TTTTCAGTGC TTCACCGGCT TTGCCTATCA GGACATCTAC GGACTCACAC GGGATAGCAT AACACTTGTT GGCCCAAAGA GGGAAAGATG GCTTGTCCGG AAACGCGGGA AAACACAGGT TGGCGAAATG GTACCGATAC TGCCAATTGT CGAGGAGCTG ATTCAAAAGT ATAAGTCCCA TCCCTATTGC GTGGCCCACG ATAAGCTGAT CCCAGTGAAC AGCAATTTCC GATACAACAC CTATTTGAAG GAGTTAGCGG ACATCTGTGA TATTCGTGAC ATCACGGGAA GTATCAGAAA ACTAGATACT CATGATGCCA GGCATTTCTT TGCAGATATG ATGCTGAACA ACGGCGTGCC CTTAGAAGAC GTAAGCAAGA TGCTTGGTCA CAGAAATATC CGGACCACGA TGCGTTATTG TCGCGTAAGG AAATCGCGCA TCAGCGAAAA TGTAGGACTG GTAAGAGATC GGTTGTTTAC TAAAACCGGA AAGCTCCGAC AACCATCCTA A
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Protein sequence | MKSNQKLSIL FWLFKAKATK DGKAPIYVRI TIDGLDDEIS LGKKVHPYDW CNQTKKVTAS GMEAKLINIA IDQARASLTS QFMVLQSQFE CITPTMLKNV YKGKPVEDKV DAPQPGSKKQ QTLLQAFDEH IEKFELMVER GMRSDNTLRH WRKLKRHVTA FIKFQYKASD LNFSELSGLF AEELYEYLTL HKPKPLAEVS ARKDVKWTRQ IVKIGVKKDF ITRNPMEGFK CSGGDVEVIP LEFEQVERIH RKKLHVERLV EVRDAFIFQC FTGFAYQDIY GLTRDSITLV GPKRERWLVR KRGKTQVGEM VPILPIVEEL IQKYKSHPYC VAHDKLIPVN SNFRYNTYLK ELADICDIRD ITGSIRKLDT HDARHFFADM MLNNGVPLED VSKMLGHRNI RTTMRYCRVR KSRISENVGL VRDRLFTKTG KLRQPS
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