Gene Dfer_0776 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0776 
Symbol 
ID8224345 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp916637 
End bp917224 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content54% 
IMG OID644928647 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003085201 
Protein GI255034580 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.744853 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.285853 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGTTTT CCGCTTCACC GCCAGACCAC GACGAGTTAC TTGCCGGCCT GAAATCCGGG 
AACGAGGCGG CGTTCAGGAA GATCTATGAA AAGTTCTGGT CGCCCCTGTA CGCGGTCGCC
TACAATCACC TTCGCGAGCG GATGGTGGCC GAAGAAATGG TCCAGGAGCT TTTTACCAAA
CTCTGGCTGA AACGGGACCA GCTGAATATC CACACATCGC TGCAAGCTTA CCTGTACAAG
GCGATCCGCC ACCTCATTTA CGATCATATC GACAAGCAGC AGGTGCGGCA GCGCGTGCAC
GAGGAAATGC TCAGCCAGGG CTCGGAGGCG AGTTATATGA CCGAGGAAAC GCTCGATTTT
CAGGAACTGC AAGTCAGGCT GGCCCAGGCC GTGGATCAGC TGCCGCAACC GGCGCAGGCG
GTTTTTAAAA TGAGCCGGCA GGAATATTTG TCACCCAAAG AAATTGCGGG CCGCTTGAAT
GTTTCTTCCA AAGCCGTAGA ATATCACCTG ACCCGCGCAT TGCGCATACT GCGGCTTCGG
CTGAAAGATT TTGTTTTGTT TATTTCTCTT TGTCAAATGC TGGGGTAG
 
Protein sequence
MQFSASPPDH DELLAGLKSG NEAAFRKIYE KFWSPLYAVA YNHLRERMVA EEMVQELFTK 
LWLKRDQLNI HTSLQAYLYK AIRHLIYDHI DKQQVRQRVH EEMLSQGSEA SYMTEETLDF
QELQVRLAQA VDQLPQPAQA VFKMSRQEYL SPKEIAGRLN VSSKAVEYHL TRALRILRLR
LKDFVLFISL CQMLG