| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0679 |
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| Symbol | |
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| ID | 8224248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 798509 |
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| End bp | 801955 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644928552 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003085106 |
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| Protein GI | 255034485 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0517707 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA CAGATACCAA TTATCATTAC ATTCATATAC TAATGAAAGT AAGCCTTCCG
GTAGTGTTGC TCTTCCTGGT TACGTGCATG AGTTACGCGC GTACGGGCTC CGCGCAGGAG
TTGTTGACCC AAAAAGTGTC TTTTACCGCA GAAAACGAAC CTTTGAAAAG CGTGATCGCA
CGTCTGGAAA AGATTTCCAA CGCACGGTTC ACCTACACCG CGTCGCTCGT GCGCAACAAG
CGCGTGAGTG TGAAAAGCAG CGGTACCACC CTCGAAAACC TGCTGAACCA AATTTTCGAA
CCACTGCGTA TATCATATAG CGTTTCCGGT GAATTCATCA TCCTGGAAAA ACTCGGCGCG
GCTCCAACGG GCATGGAAGC GCCCCGGCCG CCTGCATTTC CGCAGGTAAC CTCGCCGGCC
GAAGCGCGAA TAACGGGAAA AGTGACCGAC GAGAAAGGCG AGGCATTGCC GGGCGTAAGC
ATTCTGATCA AAGGCACGCA GCAGGGCACC GCTACCCAGG CCGACGGGAC TTACAGCCTT
ACCGTGCCTG ATGAAAATGC AGTGCTGGTA TTCTCCTACG TCGGTTTTCT GAGCCGCGAG
GTCACCGTCG GGAGCGGATC GGTGCTGAAT GTAACGCTGG CCGCCGACCA GAAAGCCCTG
GACGAAGTGG TAGTGGTGGG TTATGGCGAA CAATCCCGGA AAAAGCTCTC GACGGCCATC
AGCAAAGTTT CCGCGAAGGA AATCAACCAG CTGCCGGTAG CCATGCCGGG CGATGCGCTG
GCAGGTTTGG CGGCGGGCGT GCAGGTACAG GCAGGCGCGG GCGACGTTCC GGGCGCGGCA
CCCACGATAC GGATCAGGGG CATCGGCTCG CTGGGCGCGT CGAGTCAGCC GTTGTATGTG
ATCGACGGCT ATCCTTTGAA TGCAGCCGAG TTTTCGAGGA TCAATGTTTC GGATATCGAA
TCCATTGAAA TACTTAAAGA CGCGGCCTCC GCAGCCATTT ACGGCTCCCG CGCGGCGAAT
GGGGTAGTGC TCGTGACGAC CAAGCGCGGC AAAGATGGCA AGATCGATTT CAACTTCAAC
GCCTACACCG GCGTGCAGAA CGTGGCACAG CGGATTGACG TGATGGACCG CGACGAATAC
CTGCAATATG CCAAGGATGC CCGCAATGCG GCCAAGCTGC CTTACCCCGA CGCGTACAAC
TCGCCCGAAC AACTCGCCAA TACCGATTGG CAGGACGAGA TTTTTCGCAC GGCACCTATG
TCCAAATGGG AGCTCAGCGT AAGAGGCGGC ACTGATAAAG TACGTTTTTC GGTTTCAGGG
AGCTATCTCA CCCAAAAAGG CACCATGCGC GGCACCGACT ACAAACTGAT GACGCTGCGC
GCGAACGTGG ATGCCAACCT GAGCAAGTCG CTCAGCATCG GGGCCGATTT CGCGCCTACC
TACTCCGTGC AGAACAACAT GCCCACGCCG CGAGAGCCCG GGACCTGGGG ATATAGCCCC
ATTTACGCGG CTATGCTCAT GCCGCCCGTC GTGAGCGCCC GTCTTCCCAA TGGCGATTAC
GGACAAAACA ATGTGCTGCC GCACACGCAG TACGGATTTT CGGAAGTGGG CGTGTACAAC
CCGCTGTCGG TGCTGGAACA ATATCAAATG CGCGACAGCC GGTTTGCCGT GCAAAACAAC
CTGTACGTGC AATGGGAAAT CATGAAAGGG CTAAAATTCC GCAGCCAGGG CGGTGCATTG
CTCGCCAATG CGGGTAACGA AACGTACCTG CCTTCGACGC TCGCTAATCC GGTAGCGCCT
TTTGCCAACA ATTCCAATCC GCTCCTGGCC GGGATCGCCG CCAGTTCCAC CAACGGACGG
GCCATCGACT GGGTTTGGGA AAATAACCTC ACCTACGCCA ACCGCTTCGG AACAGACCAT
AATGTGAATG CAATGCTCCT GTATTCCATG CAGAAATACA CGACATCGAC CACCGGCACC
AGCGGCCGGG TAGGGACGTT CACCAACGAC CTCGTGCGTA ACCCGACGGC CTCGTCCAAC
CAGGCGGGCA CGATCACCTA CGGCGCCAAT TCATTTTTGT CCTACGCTTT CAGGCTGAAT
TACGATTACA AAGACAAATA CCTGTTTTCC GGCTCGGTGC GGACGGACGG ATCTTCACGC
TTCGGGCCCG ACAACCGGTT TGGGGTATTC CAATCCTACT CCGTGGGCTG GCGGCTGTCG
CAGGAGGAAT TCATGCAGTC GCAAACCTTG TTTGATGAGT TGAAACTGCG TGTCAGCTAC
GGCGAAACGG GTAATGCGAA CATCGGGGAC TTTACCTGGA TGAGCGGGAT GACGCCCACC
CATTACAGCT TCGGCGGACA GCGCATGGCG GGCGCAAGCC CACTCGGCTT CCTGAACCGC
AACCTTACCT GGGAGAAAAA CAAGCAAACC GACCTCGGCC TCGACGCATC GTTTTTGAAT
AACCGCATTC ACCTCACGCT GGACTTGTAC CGCAAAAACA CCAAGGGAAT GCTGTTTTCG
AAAGAGCTGC CGGCACTCGT GGGGTACGCG ACCTCGTTCC AGACCAATAT CGGCGAAATT
CAGAACAAGG GTTTGGAAAT TGACCTGAAC ACGGAAAATC TGACCGGAAA GCTGAAATGG
AACACCGGTT TCAACCTCAG CTTCAACACC ACCAAAGTGC TGGACCTGGG CGGACGTTCT
TCGCTGAACA CCTACGTGGG CACGCCGGGC TGGCCGAATG TGTACAAAAT CGAGGTTGGC
CAGCCGCTTG GGCGCTTTTA TGGCTTCCAG ATCGACGGCG TGATCAAAAA CGAGGCACAG
CTCAACGGGC AGGCACAGTG GCCGGGCTCC GGCGTGGGCG ACTACCAGAT CAGGGATGTG
AACGGCGACG GGCAGATCAA CGAGGACGAT CGCATGTACC TCGGGAATGG GTTGCCAAGA
GTGATTTTCG GGTTGACCAA CAACGTTTCG TACCGCAATT TCGACCTGAG CGTGATCGTG
CAAGGGACAG CCGGTAACAG CATCATCAAC GGCGCCAGCA GGCACACCGA GCTGTGGGCG
GGGCGTTTCA ACACGGTGAA GGAAATGGTA GGCAACTATT TCGATCCCGC TAATCCCGAC
CGCGACGTGA AATATGCCCG GGTAGGGCCG CGTGCAGGGT TTTCGGCAGC GGGTAACCTG
CATTCGCATG CAGTTTACAA CGGGTCTTTC GTGCGGGTGA GGAACGTAAC GCTCGGCTAC
ACGCTTCCGG CATCGCTGCA ACGCAAGCTG TCCCTGAATG CGACACGCGT GTATTTGACG
GGACAAAACC TGTTCACATT CACGAAATAT CCCGGTTTTA ACCCCGAACC GAGCCAGTTT
GGCGACACTG CCTACCAGCC CGGCTCCGAC CAGGCGACCT ATCCGATCAA CCGCAGTGTG
ATGGTGGGTT TAAATATTTC CTTCTAA
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| Protein sequence | MKKTDTNYHY IHILMKVSLP VVLLFLVTCM SYARTGSAQE LLTQKVSFTA ENEPLKSVIA
RLEKISNARF TYTASLVRNK RVSVKSSGTT LENLLNQIFE PLRISYSVSG EFIILEKLGA
APTGMEAPRP PAFPQVTSPA EARITGKVTD EKGEALPGVS ILIKGTQQGT ATQADGTYSL
TVPDENAVLV FSYVGFLSRE VTVGSGSVLN VTLAADQKAL DEVVVVGYGE QSRKKLSTAI
SKVSAKEINQ LPVAMPGDAL AGLAAGVQVQ AGAGDVPGAA PTIRIRGIGS LGASSQPLYV
IDGYPLNAAE FSRINVSDIE SIEILKDAAS AAIYGSRAAN GVVLVTTKRG KDGKIDFNFN
AYTGVQNVAQ RIDVMDRDEY LQYAKDARNA AKLPYPDAYN SPEQLANTDW QDEIFRTAPM
SKWELSVRGG TDKVRFSVSG SYLTQKGTMR GTDYKLMTLR ANVDANLSKS LSIGADFAPT
YSVQNNMPTP REPGTWGYSP IYAAMLMPPV VSARLPNGDY GQNNVLPHTQ YGFSEVGVYN
PLSVLEQYQM RDSRFAVQNN LYVQWEIMKG LKFRSQGGAL LANAGNETYL PSTLANPVAP
FANNSNPLLA GIAASSTNGR AIDWVWENNL TYANRFGTDH NVNAMLLYSM QKYTTSTTGT
SGRVGTFTND LVRNPTASSN QAGTITYGAN SFLSYAFRLN YDYKDKYLFS GSVRTDGSSR
FGPDNRFGVF QSYSVGWRLS QEEFMQSQTL FDELKLRVSY GETGNANIGD FTWMSGMTPT
HYSFGGQRMA GASPLGFLNR NLTWEKNKQT DLGLDASFLN NRIHLTLDLY RKNTKGMLFS
KELPALVGYA TSFQTNIGEI QNKGLEIDLN TENLTGKLKW NTGFNLSFNT TKVLDLGGRS
SLNTYVGTPG WPNVYKIEVG QPLGRFYGFQ IDGVIKNEAQ LNGQAQWPGS GVGDYQIRDV
NGDGQINEDD RMYLGNGLPR VIFGLTNNVS YRNFDLSVIV QGTAGNSIIN GASRHTELWA
GRFNTVKEMV GNYFDPANPD RDVKYARVGP RAGFSAAGNL HSHAVYNGSF VRVRNVTLGY
TLPASLQRKL SLNATRVYLT GQNLFTFTKY PGFNPEPSQF GDTAYQPGSD QATYPINRSV
MVGLNISF
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