Gene Dfer_0650 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0650 
Symbol 
ID8224219 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp755124 
End bp756611 
Gene Length1488 bp 
Protein Length495 aa 
Translation table11 
GC content56% 
IMG OID644928523 
Productglycoside hydrolase family 43 
Protein accessionYP_003085077 
Protein GI255034456 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3507] Beta-xylosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0713148 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.104092 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAGAT TGTGTATTGT ACTGTTCCTG TTGACATTAT ACCAAACTGT AAATGCCCAG 
CGTGCGGTCG TCCGCGGCGA TTTCGCCGAC CCGTCGGTGA TCAAGGTGGG CGATACTTAC
TATTCCGCCG CAACCAGCTC CAACTGGGCG CCTGCATTCC CGCTGATGAA ATCGAAGGAC
CTTCGGAACT GGGAACAGAT CGGCGCCATT TTTCCCGACC TCACCACCTG GGCCGATTAC
TACTACTGGG CACCCGAACT GAATTACGAT AATGGAAAGG TGTACGTGTA TTACACTGCG
CACAAAAAAG GCGGCAACCT GTGCGTCGGC GTTGCCAGTG CCGATCGGCC GGAAGGCCCT
TACAAAGACC ACGGCCCGCT GGTATGCGAG GCAGCAGGCT CTATCGACGG CTTCCCCATG
CGCGACGAGC AGGGCAAGTT GCACCTGATC TGGAAGGAGG ACGGCAACAG CATCGGAAAG
CCGACGCCGA TCTGGATACA GCCGATGAAT GAAGAACGGA CCGCGCTGAC CGGCGAAAAA
AAGGAGCTTT TCCGCAACGA CGCGCCCTGG GAAGCTAATC TCGTGGAAGG TGTGGCTGTG
GTGAAAAACA ATGGCTATTT CTTCGCGATT TACGCGGCTG CGGGCTGCTG CGGACCTGGC
TGCACCTATG CAACGGGCGT TGCACGCGCG AAAAACCTGC TGGGGCCGTG GGAGAAGTTT
GCCAGCAACC CGATCCTCAC CGCCGAGGGC GATTGGATGT GCCCCGGCCA CGGAACCGCG
GTAACGCACA ATGGCAAAAA TTACCTGATG TACCACGCCT ACGACAAGGC ATCCAACAAA
TACACAGGCC GGCAGGCGCT CATCCGGGGC TTCGAGTTCA CGCCCGACAA CTGGCTCCGC
TTCACCAACG AATACATTAC CCCCGCCGAC ACCCGCACCG CCTACACCGT CAGCGATCGT
TTCGATAAGC CGGAACTGGA CGTGCAATGG AGCTGGTCGG TGTTCAATAA ACCATCCGTG
CAGATCGGCA ACGGCCAGTT AGGCATTAAG CTGAAAAACG AGCGGGAAGT ATTTATCGCC
CGGAAAATCG ACAGCCCTGC GCACGAAACC ACGGTGGAAA TTATCCCAGC GCGAGCCGCC
CTGGCCGGCG TAGGGCTCAT CGGCGACGAC CAAAACCTGA TTTATGCTGC CGCCACGCAG
GATAGCATCC AGGTTGCAAT GCTCAAAAAG GGCGTCAGCA GCAGCCTGGG CAAGTTTCCC
CTGGCGGCCA AAGGGAAGCG TGTGTTTTTG AAAATGCTGG TTAAAAACAA TACTGCCATC
AGTTTCCAGT ACAGCCTGAA CGGAAAGACA TTTATTTCCC TGAACATCCC GGCTACGGAT
ATCAGCTATC TCCCGCCATG GGACCGCGCC GTGCGTGCGG GCATCATTGC CAAAGGGCGG
GCGGGAGATG AAGCAACAGT GGAAGGATTT GTATTTCAAA GCAAATAA
 
Protein sequence
MKRLCIVLFL LTLYQTVNAQ RAVVRGDFAD PSVIKVGDTY YSAATSSNWA PAFPLMKSKD 
LRNWEQIGAI FPDLTTWADY YYWAPELNYD NGKVYVYYTA HKKGGNLCVG VASADRPEGP
YKDHGPLVCE AAGSIDGFPM RDEQGKLHLI WKEDGNSIGK PTPIWIQPMN EERTALTGEK
KELFRNDAPW EANLVEGVAV VKNNGYFFAI YAAAGCCGPG CTYATGVARA KNLLGPWEKF
ASNPILTAEG DWMCPGHGTA VTHNGKNYLM YHAYDKASNK YTGRQALIRG FEFTPDNWLR
FTNEYITPAD TRTAYTVSDR FDKPELDVQW SWSVFNKPSV QIGNGQLGIK LKNEREVFIA
RKIDSPAHET TVEIIPARAA LAGVGLIGDD QNLIYAAATQ DSIQVAMLKK GVSSSLGKFP
LAAKGKRVFL KMLVKNNTAI SFQYSLNGKT FISLNIPATD ISYLPPWDRA VRAGIIAKGR
AGDEATVEGF VFQSK