Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_0650 |
Symbol | |
ID | 8224219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 755124 |
End bp | 756611 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644928523 |
Product | glycoside hydrolase family 43 |
Protein accession | YP_003085077 |
Protein GI | 255034456 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3507] Beta-xylosidase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0713148 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.104092 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGAGAT TGTGTATTGT ACTGTTCCTG TTGACATTAT ACCAAACTGT AAATGCCCAG CGTGCGGTCG TCCGCGGCGA TTTCGCCGAC CCGTCGGTGA TCAAGGTGGG CGATACTTAC TATTCCGCCG CAACCAGCTC CAACTGGGCG CCTGCATTCC CGCTGATGAA ATCGAAGGAC CTTCGGAACT GGGAACAGAT CGGCGCCATT TTTCCCGACC TCACCACCTG GGCCGATTAC TACTACTGGG CACCCGAACT GAATTACGAT AATGGAAAGG TGTACGTGTA TTACACTGCG CACAAAAAAG GCGGCAACCT GTGCGTCGGC GTTGCCAGTG CCGATCGGCC GGAAGGCCCT TACAAAGACC ACGGCCCGCT GGTATGCGAG GCAGCAGGCT CTATCGACGG CTTCCCCATG CGCGACGAGC AGGGCAAGTT GCACCTGATC TGGAAGGAGG ACGGCAACAG CATCGGAAAG CCGACGCCGA TCTGGATACA GCCGATGAAT GAAGAACGGA CCGCGCTGAC CGGCGAAAAA AAGGAGCTTT TCCGCAACGA CGCGCCCTGG GAAGCTAATC TCGTGGAAGG TGTGGCTGTG GTGAAAAACA ATGGCTATTT CTTCGCGATT TACGCGGCTG CGGGCTGCTG CGGACCTGGC TGCACCTATG CAACGGGCGT TGCACGCGCG AAAAACCTGC TGGGGCCGTG GGAGAAGTTT GCCAGCAACC CGATCCTCAC CGCCGAGGGC GATTGGATGT GCCCCGGCCA CGGAACCGCG GTAACGCACA ATGGCAAAAA TTACCTGATG TACCACGCCT ACGACAAGGC ATCCAACAAA TACACAGGCC GGCAGGCGCT CATCCGGGGC TTCGAGTTCA CGCCCGACAA CTGGCTCCGC TTCACCAACG AATACATTAC CCCCGCCGAC ACCCGCACCG CCTACACCGT CAGCGATCGT TTCGATAAGC CGGAACTGGA CGTGCAATGG AGCTGGTCGG TGTTCAATAA ACCATCCGTG CAGATCGGCA ACGGCCAGTT AGGCATTAAG CTGAAAAACG AGCGGGAAGT ATTTATCGCC CGGAAAATCG ACAGCCCTGC GCACGAAACC ACGGTGGAAA TTATCCCAGC GCGAGCCGCC CTGGCCGGCG TAGGGCTCAT CGGCGACGAC CAAAACCTGA TTTATGCTGC CGCCACGCAG GATAGCATCC AGGTTGCAAT GCTCAAAAAG GGCGTCAGCA GCAGCCTGGG CAAGTTTCCC CTGGCGGCCA AAGGGAAGCG TGTGTTTTTG AAAATGCTGG TTAAAAACAA TACTGCCATC AGTTTCCAGT ACAGCCTGAA CGGAAAGACA TTTATTTCCC TGAACATCCC GGCTACGGAT ATCAGCTATC TCCCGCCATG GGACCGCGCC GTGCGTGCGG GCATCATTGC CAAAGGGCGG GCGGGAGATG AAGCAACAGT GGAAGGATTT GTATTTCAAA GCAAATAA
|
Protein sequence | MKRLCIVLFL LTLYQTVNAQ RAVVRGDFAD PSVIKVGDTY YSAATSSNWA PAFPLMKSKD LRNWEQIGAI FPDLTTWADY YYWAPELNYD NGKVYVYYTA HKKGGNLCVG VASADRPEGP YKDHGPLVCE AAGSIDGFPM RDEQGKLHLI WKEDGNSIGK PTPIWIQPMN EERTALTGEK KELFRNDAPW EANLVEGVAV VKNNGYFFAI YAAAGCCGPG CTYATGVARA KNLLGPWEKF ASNPILTAEG DWMCPGHGTA VTHNGKNYLM YHAYDKASNK YTGRQALIRG FEFTPDNWLR FTNEYITPAD TRTAYTVSDR FDKPELDVQW SWSVFNKPSV QIGNGQLGIK LKNEREVFIA RKIDSPAHET TVEIIPARAA LAGVGLIGDD QNLIYAAATQ DSIQVAMLKK GVSSSLGKFP LAAKGKRVFL KMLVKNNTAI SFQYSLNGKT FISLNIPATD ISYLPPWDRA VRAGIIAKGR AGDEATVEGF VFQSK
|
| |