| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0593 |
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| Symbol | |
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| ID | 8224162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 673225 |
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| End bp | 676632 |
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| Gene Length | 3408 bp |
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| Protein Length | 1135 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644928468 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003085022 |
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| Protein GI | 255034401 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0125278 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCACCG CGTCGCCGCC TTTGGACGCC CAGGTGCTGG CCCTGAACGC GCATAAGAAC
CGCATGCTCC CGCCGGAGCA AACCACCCAC CAGGTGAAGT TACTCGACGT GCTTTTACAA
CTTAAAAAAT TCTATTCCGC CGATATCCTG TTCGAAGAGA GCCAGATGAG CGGCATTACC
GTCCCGGATT TTGTGTTCGA CAAAAACCTT TCCGCGGAAA AGAACATGGA GGCATTGCTC
AAATCCACAG GGCTGGTACT CAAAAAGGTA CGTAAGAATG CTTACATGAT TTTGCCGAGA
AGGATCGAGA CGTCGGCTAT TGGCAGCCGG CCGTCGGCTG ATTTGCAGGT GGTGGCAGGT
GCAAGGGCCG TAGCGGCCGA GATAAAGGTC AGCGGAACGG TAACGGACAA CAACGGCGAG
GGCCTCCCGG GCGTGAACGT GCTCGTAAAA GGCACGATTA ATGGTACCAA CACGGATGTG
AACGGCAAGT ATGAGCTCGA TGTGCCTTCG TCCGAGTCGG TGCTCGTGTT TACTTCAATC
GGCTTCCAGA AGCAGGAAGT GGCGGTGGGA CAGCGCTCGG TGGTGGATGT GAAAATGGCG
GTGGAAACGC AAACGCTCGA CGAGGTGGTG GTAACCGCAT TGGGGATCAA AAAGGAGAAA
AAGGCGCTGG GTTATGCCAT TTCGGAAGTG AAAGGCGAAG AACTCACGCA GGCGCGCTCG
ACCAACATCG CCAACAGCCT CGTGGGCAAA GTGGCGGGTC TGAACATTTC CAGCACGGCG
ACGGGACCGA GCGGTTCGTC GCGTATAGTA ATCCGCGGTA ATGGCTCCAT TTCGGGCAAC
AACCAGCCGC TGATCATCGT CGACGGGATT CCTATTAACA ATGATAACCT CGGCTCGGTG
GCCATCGGCG CCAACCGCGA GGGCTCATGG ACCGGCTCCG ACCGCGGCGA CGGTATTTCG
AGCTTGAACC CCGACGAAAT CGAGAGCATC AGCGTTTTGA AAGGTGCAAC CGCGGCGGCG
TTATATGGCT CGCGGGCCTC CAATGGCGCT ATTTTGGTAA CTACAAAAGG CGGCAAGGCG
GATAAGGGCA TCGGCGTGGA AGTGAACAGC AACTTTCTTG CAGAGGATCT TTTGTTTAAA
TCCTACAAAG ACTATCAATA CGAATACGGC CTCGGCAGCA ACGGCGTGAA ACCGACCACC
GTGGCCGAAA CTGCCACGCG TAACTCCTGG GGCGGCCGCC TGGATGGCAG CAACTCTATC
AACTACGACG GTGTGGAGCG CCCGTACGTG GCCGCGAAGG ACAACCTGCG CAAGTTTTAT
AATGTCGGGA CCACATTCAC GAACTCCATC GCATTGACGG GCGCTACCGA AAAGGTGACC
TACCGCTTGT CGATGAGCGA CCTGAACAAC AAAGGCGTGC TGCCCAACAA CACGCTCCGC
CGCAACAACT TCGCATTGAA CACCAATGGT AACCTCGGCA AACGCATTTC GTTCGTGGCC
AATGCGAAGT ATATCATCGA GAAAAACCAC AACCGCCCGC GTGTGAACGA CTCGCCGGGT
AATGCGAACT TCGCGATGTA CGTGCTCCCG ACGTCGCTCG ATGTGGATGT GCTCAAAAAC
GCGCAGTTCG ATGCGAACGG CAACGAAAAG GTGTGGTCGG ACAACCAGTA CACCCAAAAC
CCGTACTTCG CCACCGAGCA GTTCCAGCAG GATGATAACA AGAAGCGCGT AATCGCCTCA
TTTGAACCAA AATACACCAT TACCGACTGG CTTTACCTGA AAGGCCGCAT TGGTTTCGAT
AATTTCAATT ACCGGTACAA AAGCATTGAG CCGTACGGGA CGGGCTATGT GCTGCGGGGA
AGCTATACAT CGTCGCTGCG CGAGTTCACA GAAACCAACA AGGAGCTTTT GGTAGGTATC
AACCGAAAAA TGGGCGAGAA GTTTGCATTC AGTGGCTTGT TTGGCGGAAA CATGATGAAG
CAGGTAACGA ACCTGAACGA GGTTTCGGCC AACAACAGCT TCAACATTCC GTTCTTTTAT
GACATTTCCA ATATCGACCC CGCAGCCCGC ACGGTTACGG AGGCTTATAT CGAAAAGCGC
ATCAACTCGG TGTACGGCTC GGCGGAATTT TCATACAACA ATTACCTTTT TGTGACCGCT
ACGGCGCGTA ACGACTGGTT TTCGACGCTT GCCAAGGGTA AGAACAGCAT TTTCTACCCG
TCGTTCGGCG TGAGCTTTGT GGCTTCGGAG GCCTTGAAAA TGCCTGCGGT GATCAACTAC
CTGAAATTCC GCGGATCGTG GGCACAGGCC GGTGGCGATA CCGACCCGTA CAACCTGTCG
CTTTACTACT CGCTGAGCGG TGCGCACTTG GGATCGGCAT TGGCGCAGAT CAATGGAACG
CGCGTGCCGA ACAGCGGTTT GCAGCCATTG ACTTCAACGG TTTCCGAGCT GGGTTTGGAA
GCTAAATTGT TCAATAACCT GCTGAATGTC GACTTCGCGG TGTACGATCG TAAAACGACC
GACGATATTG TAAGTGCCAC TATTTCACAG ACTTCCGGCT ACACGAGCGC ATTGTTCAAC
GTAGGAGCGA TCCGTAACCG AGGTATCGAG CTGCTTTTGG GCGCTACCAT CGTGAATAGC
AAGAAATTTA CCTGGGACGC ATCGTTCAAC ATGGGTTACA ACGACAGTGA GGTGCTGAGC
CTTTACGGCG ATCTGCAAAC GCTGCGCGTG GACCAGTCGC GGCCGGGCTC GGCGTTTATC
CACCAGGATG TAGGCAAGCC TTACAGCCAG ATCAAAGGAT ATGATTTCAA ACGCGACGCG
AGCGGCAACA TCGTGTACAA CTCGCAGGGC CTTGCCATGG CGGGCGACAT CAAGACCTTT
GGCTCGGGCG TATCGCCTTA CACATTGGGT TTGAACAATA CATTCAACTA CAAGGGCATC
AGCCTCAGTG TGTTGGTGGA TGGTAAATTC GGCGGGTACA TTTATTCGGG TACCAATGCC
CTGGCTTATC GTTTCGGCTT GCACGAAGCC ACGCTGGTGG GCCGCGAAGG CGGTGTAACG
GGCGAGGGCG TGACCGAATC AGGCGAGCCT AATACCGCGA AAGCGCCTGC GCAGGCTTAT
TACAGCAACT GGTACTCGGC CATTGCTACG CCATTTGTGC ATAAATCAGA CTTTATCAAA
CTGCGCCAGA TCATTTTCCA ATACTCGATC CCGAGCCGCT TCCTGGGCAA GATGCCGTTC
AAAGGTGCAT CGGTGTCGAT CGTGGGACGT AACCTGGCGG TGCTCATGAA GAAAGTGCCG
GTAATTGATC CCGAAGCGAC TTACAACAAC GGCAACGCGC AGGGAGTAGA GTTTGCCGGA
ACGCCGCCGA CGCGGTCATA CGGTGTGAAC CTGAACCTGA AATTCTGA
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| Protein sequence | MLTASPPLDA QVLALNAHKN RMLPPEQTTH QVKLLDVLLQ LKKFYSADIL FEESQMSGIT
VPDFVFDKNL SAEKNMEALL KSTGLVLKKV RKNAYMILPR RIETSAIGSR PSADLQVVAG
ARAVAAEIKV SGTVTDNNGE GLPGVNVLVK GTINGTNTDV NGKYELDVPS SESVLVFTSI
GFQKQEVAVG QRSVVDVKMA VETQTLDEVV VTALGIKKEK KALGYAISEV KGEELTQARS
TNIANSLVGK VAGLNISSTA TGPSGSSRIV IRGNGSISGN NQPLIIVDGI PINNDNLGSV
AIGANREGSW TGSDRGDGIS SLNPDEIESI SVLKGATAAA LYGSRASNGA ILVTTKGGKA
DKGIGVEVNS NFLAEDLLFK SYKDYQYEYG LGSNGVKPTT VAETATRNSW GGRLDGSNSI
NYDGVERPYV AAKDNLRKFY NVGTTFTNSI ALTGATEKVT YRLSMSDLNN KGVLPNNTLR
RNNFALNTNG NLGKRISFVA NAKYIIEKNH NRPRVNDSPG NANFAMYVLP TSLDVDVLKN
AQFDANGNEK VWSDNQYTQN PYFATEQFQQ DDNKKRVIAS FEPKYTITDW LYLKGRIGFD
NFNYRYKSIE PYGTGYVLRG SYTSSLREFT ETNKELLVGI NRKMGEKFAF SGLFGGNMMK
QVTNLNEVSA NNSFNIPFFY DISNIDPAAR TVTEAYIEKR INSVYGSAEF SYNNYLFVTA
TARNDWFSTL AKGKNSIFYP SFGVSFVASE ALKMPAVINY LKFRGSWAQA GGDTDPYNLS
LYYSLSGAHL GSALAQINGT RVPNSGLQPL TSTVSELGLE AKLFNNLLNV DFAVYDRKTT
DDIVSATISQ TSGYTSALFN VGAIRNRGIE LLLGATIVNS KKFTWDASFN MGYNDSEVLS
LYGDLQTLRV DQSRPGSAFI HQDVGKPYSQ IKGYDFKRDA SGNIVYNSQG LAMAGDIKTF
GSGVSPYTLG LNNTFNYKGI SLSVLVDGKF GGYIYSGTNA LAYRFGLHEA TLVGREGGVT
GEGVTESGEP NTAKAPAQAY YSNWYSAIAT PFVHKSDFIK LRQIIFQYSI PSRFLGKMPF
KGASVSIVGR NLAVLMKKVP VIDPEATYNN GNAQGVEFAG TPPTRSYGVN LNLKF
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