Gene Dfer_0558 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0558 
Symbol 
ID8224127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp625279 
End bp627732 
Gene Length2454 bp 
Protein Length817 aa 
Translation table11 
GC content55% 
IMG OID644928434 
ProductTonB-dependent receptor plug 
Protein accessionYP_003084988 
Protein GI255034367 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000727933 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGATT TACCAAGACG CTCCCTCCTA TTACTTACCC GACCGTCGCT CTGCGCGTTA 
CTCACGGCCG TGCTACCGTT TTCGGGGCAG GTTGCGTGGG CACAGCAGTC GGCGCCGGAC
AAAAAAGTGA AACAAACTAC CACCCAGTCG GTGCCGAAAA CCGGCAAGGG CTCGGTGAAA
GGCAAGGTGC AAACGCCTGA CGGCAAGCCG GTGGAATTTG CCAATGTGGT TGTAAAAGGC
ACCGGCAAGG GCACTCAAAC CGATGAAAAG GGCGCATTTA CCATTAACGA CATCCCCGAA
GGCGAGCATA GCCTGCTGGT GCAGCACCTC GGGTTCACCT CCGCCGATCT GCCATTTACG
GTAGAAACCG GCGAGCAAAC GGTGCTGGAA GCTATTACCG TGCAGGAAGG AGACAAAAAC
CTGAATGAAG TGGTGGTTTC AGCCGGCCGC GTGCGCGAGA GCCTCAATTC CGTGCCCGCG
TCGATTGCCG TGCTGAAAGC GAAGGAAATC CAGGAACAGG CGACGATCAA CAACTCCATC
GCGGCGATTT TGGGCAATAC CATTCCGGGG CTGGGAATGC CGAATAACAA GGCGACCAAC
ACCGGCCAAA CGCTGCGCGG AAGGAGCCTC CTGGTGCTCG TGGACGGCAT TCCGCAGTCG
ACGCCGCTCA TGAACGGTAA CCGCGACATC CGCTCCATCG ACCCTGCCGT GCTGGAACGC
GTAGAGGTCG TGAAAGGCGC GACGGCCATT TATGGCAACG GCGCCGGCGG CGGGCTGATC
AACTACATTA CCCGGAAACC GACCGAGAAT AAAGCGATCG CCGGCATCAC GCAGCTCGGC
ATGCATGGCA ATCTGTTCCA CATGGCCGAT ACGCCGGGCT ACCGCATTTC GCAGATGCTG
GAAGGAAAGA TCAACAAGTT TTCCTACGTT GTGAGCGGCC TGCTCGACCG CACCGGTGTG
TACAAAGACG GTGCCGGCGA TGTGATCTCA ACGTCCAATG GATTGGGTGA AACGAGGCTT
TACAATGCCT ACACGAAGCT TTTCTATGAC TTCAATGCCG ATAATGAGCT GGAATTCTCG
TTCAACCTGT TCAGCAGCCG GCAGTATACC AAATACGTGA ACAAACCGGG CGTTTATGGC
GAAACACCGA CTATCGCCGT GCCGGGCGAC AGTCCGGGCG ACGCGGAAGG CACGCCATTC
AACTACAACT TTTCGCTTCG TTACCTGCGT CGCGGGCTTT GGGCAAAAAC CAGTATGGAC
ATTACCGCCT ACCTGAACGG TTTCGAATCA ATGAACGCCT ACACGGCCTC CACATCGGGC
TGGTATGGCC CCGGGCAAAC GCAGATCACA TCGCGCAAAA AAGGGCTCCG GGCCAACTTT
TACACGCCAT TCAATGTCAG CCCGAACTTC GGCGGCGGCG TTACCTACGG GATCGACATC
CTGGGCGACG TGACGAACCA GGTGCTCACC GACGGTCGCG TGTATGTGCC CGACATGAAC
ATGACGAGCA TTGCGCCTTA CGCACAGGTG AAGCTGGACA TCGTCAAAGA CCTTACCCTG
AAAACCGGTG CGCGGTTTGA AAACATCGGC ATTGATGTGA AAGATTACAG CACGCTTGCC
AAGGGGCCCA ACGGCGAGGG TGCCGTGGCC GTGAAGGGCG GGAAACTGGA CTACAAGGCA
TTGAACCTGA ATGCAGGCTT GCGTTACTCG AAATACAGCC TTTTCAACCC GTTCTTTAAC
TTTTCACAGG CATTCGGGAT CAGCGAGCTG GGGCGCATCC TCCGCTCGGC CACGACCAAC
ACGATCGCCA ACCTGAACAC GAAGCCGATT ATCGTCAATA ACTATGAGGC CGGGTTCAGC
AGCCAGTACA AATTCGTGCA GTTTACAGCG GCCTATTTTA TCAGTACTTC CAAACTCGGC
GCCGATATGG TGACCGTGAA TGGCGTGATG ACCCCGCTCC GCTTGCCGGA GGAAATCAAA
GGCTATGAAT TCACACTCGA TTTCCAACCG TCTGACAAAT TATCGTTCGG CGGAAGCTAC
TCGTATGTGG AAGGCAAAGC CGACCAGAAC GACAACGGCC ATTTCGACGA CCCGGAAGAC
CGCTACCTCA CCGGCGCGCG CATTACCCCG CCAAAAGCAA CTGCATTTAT CAAATACCAG
CCGACAGACA AGCTTAACCT GAACCTTTTT TGGGTATATT CGGGTAACCG CAAGCGATTC
GACAAGCAAG CCAACGGCCG CTACGGTAAC GGCGAAGGCC CGGTAGATGC CTACGATCTT
TTTAACCTGA ATGCCTCGTA CGTGTTCAGC AAGCACATTC GTGCGGCTGT GGGTATCGAA
AATCTTCTGA ACAAGACTTA TTTCAACACG GTGAACCTGT TCAGCGGACA GGACCTGGAA
TACACCCGAG GTAATGGGTC CCGGTTTAGT TTGAATGTGT ATTACAATTT TTAA
 
Protein sequence
MKDLPRRSLL LLTRPSLCAL LTAVLPFSGQ VAWAQQSAPD KKVKQTTTQS VPKTGKGSVK 
GKVQTPDGKP VEFANVVVKG TGKGTQTDEK GAFTINDIPE GEHSLLVQHL GFTSADLPFT
VETGEQTVLE AITVQEGDKN LNEVVVSAGR VRESLNSVPA SIAVLKAKEI QEQATINNSI
AAILGNTIPG LGMPNNKATN TGQTLRGRSL LVLVDGIPQS TPLMNGNRDI RSIDPAVLER
VEVVKGATAI YGNGAGGGLI NYITRKPTEN KAIAGITQLG MHGNLFHMAD TPGYRISQML
EGKINKFSYV VSGLLDRTGV YKDGAGDVIS TSNGLGETRL YNAYTKLFYD FNADNELEFS
FNLFSSRQYT KYVNKPGVYG ETPTIAVPGD SPGDAEGTPF NYNFSLRYLR RGLWAKTSMD
ITAYLNGFES MNAYTASTSG WYGPGQTQIT SRKKGLRANF YTPFNVSPNF GGGVTYGIDI
LGDVTNQVLT DGRVYVPDMN MTSIAPYAQV KLDIVKDLTL KTGARFENIG IDVKDYSTLA
KGPNGEGAVA VKGGKLDYKA LNLNAGLRYS KYSLFNPFFN FSQAFGISEL GRILRSATTN
TIANLNTKPI IVNNYEAGFS SQYKFVQFTA AYFISTSKLG ADMVTVNGVM TPLRLPEEIK
GYEFTLDFQP SDKLSFGGSY SYVEGKADQN DNGHFDDPED RYLTGARITP PKATAFIKYQ
PTDKLNLNLF WVYSGNRKRF DKQANGRYGN GEGPVDAYDL FNLNASYVFS KHIRAAVGIE
NLLNKTYFNT VNLFSGQDLE YTRGNGSRFS LNVYYNF