Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_0558 |
Symbol | |
ID | 8224127 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 625279 |
End bp | 627732 |
Gene Length | 2454 bp |
Protein Length | 817 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644928434 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003084988 |
Protein GI | 255034367 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000000727933 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGATT TACCAAGACG CTCCCTCCTA TTACTTACCC GACCGTCGCT CTGCGCGTTA CTCACGGCCG TGCTACCGTT TTCGGGGCAG GTTGCGTGGG CACAGCAGTC GGCGCCGGAC AAAAAAGTGA AACAAACTAC CACCCAGTCG GTGCCGAAAA CCGGCAAGGG CTCGGTGAAA GGCAAGGTGC AAACGCCTGA CGGCAAGCCG GTGGAATTTG CCAATGTGGT TGTAAAAGGC ACCGGCAAGG GCACTCAAAC CGATGAAAAG GGCGCATTTA CCATTAACGA CATCCCCGAA GGCGAGCATA GCCTGCTGGT GCAGCACCTC GGGTTCACCT CCGCCGATCT GCCATTTACG GTAGAAACCG GCGAGCAAAC GGTGCTGGAA GCTATTACCG TGCAGGAAGG AGACAAAAAC CTGAATGAAG TGGTGGTTTC AGCCGGCCGC GTGCGCGAGA GCCTCAATTC CGTGCCCGCG TCGATTGCCG TGCTGAAAGC GAAGGAAATC CAGGAACAGG CGACGATCAA CAACTCCATC GCGGCGATTT TGGGCAATAC CATTCCGGGG CTGGGAATGC CGAATAACAA GGCGACCAAC ACCGGCCAAA CGCTGCGCGG AAGGAGCCTC CTGGTGCTCG TGGACGGCAT TCCGCAGTCG ACGCCGCTCA TGAACGGTAA CCGCGACATC CGCTCCATCG ACCCTGCCGT GCTGGAACGC GTAGAGGTCG TGAAAGGCGC GACGGCCATT TATGGCAACG GCGCCGGCGG CGGGCTGATC AACTACATTA CCCGGAAACC GACCGAGAAT AAAGCGATCG CCGGCATCAC GCAGCTCGGC ATGCATGGCA ATCTGTTCCA CATGGCCGAT ACGCCGGGCT ACCGCATTTC GCAGATGCTG GAAGGAAAGA TCAACAAGTT TTCCTACGTT GTGAGCGGCC TGCTCGACCG CACCGGTGTG TACAAAGACG GTGCCGGCGA TGTGATCTCA ACGTCCAATG GATTGGGTGA AACGAGGCTT TACAATGCCT ACACGAAGCT TTTCTATGAC TTCAATGCCG ATAATGAGCT GGAATTCTCG TTCAACCTGT TCAGCAGCCG GCAGTATACC AAATACGTGA ACAAACCGGG CGTTTATGGC GAAACACCGA CTATCGCCGT GCCGGGCGAC AGTCCGGGCG ACGCGGAAGG CACGCCATTC AACTACAACT TTTCGCTTCG TTACCTGCGT CGCGGGCTTT GGGCAAAAAC CAGTATGGAC ATTACCGCCT ACCTGAACGG TTTCGAATCA ATGAACGCCT ACACGGCCTC CACATCGGGC TGGTATGGCC CCGGGCAAAC GCAGATCACA TCGCGCAAAA AAGGGCTCCG GGCCAACTTT TACACGCCAT TCAATGTCAG CCCGAACTTC GGCGGCGGCG TTACCTACGG GATCGACATC CTGGGCGACG TGACGAACCA GGTGCTCACC GACGGTCGCG TGTATGTGCC CGACATGAAC ATGACGAGCA TTGCGCCTTA CGCACAGGTG AAGCTGGACA TCGTCAAAGA CCTTACCCTG AAAACCGGTG CGCGGTTTGA AAACATCGGC ATTGATGTGA AAGATTACAG CACGCTTGCC AAGGGGCCCA ACGGCGAGGG TGCCGTGGCC GTGAAGGGCG GGAAACTGGA CTACAAGGCA TTGAACCTGA ATGCAGGCTT GCGTTACTCG AAATACAGCC TTTTCAACCC GTTCTTTAAC TTTTCACAGG CATTCGGGAT CAGCGAGCTG GGGCGCATCC TCCGCTCGGC CACGACCAAC ACGATCGCCA ACCTGAACAC GAAGCCGATT ATCGTCAATA ACTATGAGGC CGGGTTCAGC AGCCAGTACA AATTCGTGCA GTTTACAGCG GCCTATTTTA TCAGTACTTC CAAACTCGGC GCCGATATGG TGACCGTGAA TGGCGTGATG ACCCCGCTCC GCTTGCCGGA GGAAATCAAA GGCTATGAAT TCACACTCGA TTTCCAACCG TCTGACAAAT TATCGTTCGG CGGAAGCTAC TCGTATGTGG AAGGCAAAGC CGACCAGAAC GACAACGGCC ATTTCGACGA CCCGGAAGAC CGCTACCTCA CCGGCGCGCG CATTACCCCG CCAAAAGCAA CTGCATTTAT CAAATACCAG CCGACAGACA AGCTTAACCT GAACCTTTTT TGGGTATATT CGGGTAACCG CAAGCGATTC GACAAGCAAG CCAACGGCCG CTACGGTAAC GGCGAAGGCC CGGTAGATGC CTACGATCTT TTTAACCTGA ATGCCTCGTA CGTGTTCAGC AAGCACATTC GTGCGGCTGT GGGTATCGAA AATCTTCTGA ACAAGACTTA TTTCAACACG GTGAACCTGT TCAGCGGACA GGACCTGGAA TACACCCGAG GTAATGGGTC CCGGTTTAGT TTGAATGTGT ATTACAATTT TTAA
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Protein sequence | MKDLPRRSLL LLTRPSLCAL LTAVLPFSGQ VAWAQQSAPD KKVKQTTTQS VPKTGKGSVK GKVQTPDGKP VEFANVVVKG TGKGTQTDEK GAFTINDIPE GEHSLLVQHL GFTSADLPFT VETGEQTVLE AITVQEGDKN LNEVVVSAGR VRESLNSVPA SIAVLKAKEI QEQATINNSI AAILGNTIPG LGMPNNKATN TGQTLRGRSL LVLVDGIPQS TPLMNGNRDI RSIDPAVLER VEVVKGATAI YGNGAGGGLI NYITRKPTEN KAIAGITQLG MHGNLFHMAD TPGYRISQML EGKINKFSYV VSGLLDRTGV YKDGAGDVIS TSNGLGETRL YNAYTKLFYD FNADNELEFS FNLFSSRQYT KYVNKPGVYG ETPTIAVPGD SPGDAEGTPF NYNFSLRYLR RGLWAKTSMD ITAYLNGFES MNAYTASTSG WYGPGQTQIT SRKKGLRANF YTPFNVSPNF GGGVTYGIDI LGDVTNQVLT DGRVYVPDMN MTSIAPYAQV KLDIVKDLTL KTGARFENIG IDVKDYSTLA KGPNGEGAVA VKGGKLDYKA LNLNAGLRYS KYSLFNPFFN FSQAFGISEL GRILRSATTN TIANLNTKPI IVNNYEAGFS SQYKFVQFTA AYFISTSKLG ADMVTVNGVM TPLRLPEEIK GYEFTLDFQP SDKLSFGGSY SYVEGKADQN DNGHFDDPED RYLTGARITP PKATAFIKYQ PTDKLNLNLF WVYSGNRKRF DKQANGRYGN GEGPVDAYDL FNLNASYVFS KHIRAAVGIE NLLNKTYFNT VNLFSGQDLE YTRGNGSRFS LNVYYNF
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