| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0542 |
|---|
| Symbol | |
|---|
| ID | 8224110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 611514 |
|---|
| End bp | 612749 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644928417 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_003084972 |
|---|
| Protein GI | 255034351 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.337517 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.833057 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTG ATGATTACCC TATTGCCGCG GAGATCAAGC GGAGCCTGGA AGCGGCCGGG
TTTAAGAAGC CGACGGACAT TCAGTTCAAG GCGATTCCGG CGGTGATGAA GGGGGAAGAT
GTACTGGCGA TTGCCCAGAC GGGCACCGGA AAGACGGCTG CTTTCGCGAT CCCGGTGATT
GATAAACTGC ATAAACAGAA GTCGTCGAGC CGCTCGGAAG GCATCAAATG CGTGGTAATG
GTCCCTACGC GGGAGCTGGC CATTCAGATT GCCGAGGTGT TCAGCAGCAT TTCGAGATAT
ACGAAAGTGA AGACATTCAG CGTGTTCGGC GGCGTGGAGC AAGGCCCGCA GATCGCGAAG
CTGGAAAAAG GCATCGACAT ACTCGTTTCG ACCCCGGGAC GAATGTTCGA CCTCGTGAGC
CAGGGCCACA TCCGCCTCGA CCGCGTGGAT ACGCTCATTC TCGACGAGGC CGACCATATG
CTCGACCTGG GGTTCATCAA AGATATTCAG GACCTGATCC GGCATCTGCC CAAGCGGCGG
CAAACGCTGT TTTTCTCGGC GACGATCGAT GAAAAGATCA AGAAACTGGC ATACTCGCTC
GTGAGAAACG CGATCCGCAT TCAGATCTCC CCCAAAAATC CCGTGGCGAA GAACATCGAC
CACTCGGTTG CATTCGTGGC GATGGACGAC AAGCGGTTCT TTCTCGAACG CGTGATCCGG
CAGAATGCCG ATAAAAAAAT CCTCGTGTTC GTTCGCACCA AGGTTCGCGC CGAACGTGTG
TTCAATGCGC TCGAACGCAT GGAAATCAAA AGCCTCACCA TTCATGGCGA CAAGCAGCAA
TCGGACCGCC TGACGGCCAT GAATGAGTTC AAGAAAGGAA ATGTAAAAAT TTTGATTGCC
ACCGACGTGA GCGCCCGCGG CATCGATATT CCGAATGTGG ATTACGTGAT CAACTACGAT
CTGCCCGAAC AGCCCGAGAG TTACGTTCAC CGGGTAGGCC GTACCGGGCG GGGCATGCAG
AAGGGCATTG CGGTGTCATT TTGCAGTGAA GAAGAAAAAC CGTTACTCGA CGAGATCCAG
CAATACCTCG ACAAGCCCAT TGCCGTGGTG AAACTAACCG CCGAAGACTA CGCAGAAACG
CTCGAATTCA CCACCGACAC CACCGACGAC CTGGGTGCGC TGATGCGGGA AATCGAGGCA
TTCGAGTCGA GGCAGAAGAA GAAAGGGAAG AAATAG
|
|---|
| Protein sequence | MKFDDYPIAA EIKRSLEAAG FKKPTDIQFK AIPAVMKGED VLAIAQTGTG KTAAFAIPVI
DKLHKQKSSS RSEGIKCVVM VPTRELAIQI AEVFSSISRY TKVKTFSVFG GVEQGPQIAK
LEKGIDILVS TPGRMFDLVS QGHIRLDRVD TLILDEADHM LDLGFIKDIQ DLIRHLPKRR
QTLFFSATID EKIKKLAYSL VRNAIRIQIS PKNPVAKNID HSVAFVAMDD KRFFLERVIR
QNADKKILVF VRTKVRAERV FNALERMEIK SLTIHGDKQQ SDRLTAMNEF KKGNVKILIA
TDVSARGIDI PNVDYVINYD LPEQPESYVH RVGRTGRGMQ KGIAVSFCSE EEKPLLDEIQ
QYLDKPIAVV KLTAEDYAET LEFTTDTTDD LGALMREIEA FESRQKKKGK K
|
|---|
| |