Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_0486 |
Symbol | |
ID | 8224053 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 546951 |
End bp | 548885 |
Gene Length | 1935 bp |
Protein Length | 644 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644928364 |
Product | Pectinesterase |
Protein accession | YP_003084920 |
Protein GI | 255034299 |
COG category | [G] Carbohydrate transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG0657] Esterase/lipase [COG4677] Pectin methylesterase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.536234 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAGGA AAACCGGTCA GCTCTTGCTA TGGTTGCTCA TCCATTTCAC CGTCCGCGCT CAGGTACAGG CCGTTGAGCA GCAATTCGTA GTTGCGCAGG ACGGCAGCGG CGATTTCAAA ACGATACAGG AAGCGGTGAA TGCCGTACGC GACCATTCGC AGATCCGCGC CACGATACGC ATTAAAAGCG GGACTTATCG TGAAAAACTG GTGATACCCG CCTGGAAAAA GAATATCACA CTCATCGGCG AAAGCGCCGA ACATACCATT ATTACAAACA ACGACTTTTC GGGCAAGGAC TTTCCCGGCC GCGATTTTAC AGGTAATGCG AAGTTTAGCA CCTACACCTC ATACACCGTG CTCGTGCAGG CCAACGACTG CACCCTTCAA AACCTGACCA TCGAAAACAC CGCAGGCCGT GTGGGTCAAG CGGTTGCATT GGCGACCGAG GGCGACCGGA TCGAAGTTTT CAATTGTCGC ATCCTCGGCA ACCAGGATAC GCTCTATACC TCCAAGAACG GCCGGAATTT CTTCCGCGAC TGCCTTATCA CCGGCACCAC CGACTTCATT TTCGGTGAAG CGACGGCCGT TTTTCAGAAC TGCACCATCC ACAGTCTCAC CAACTCCTAC ATCACCGCCG CCTCCACAAC CAGTGAACAG GCATTCGGCT ACGTGTTTTT CAACTGCAAA CTCACCGCAG CCGGCGAAGC CACCAAAGTA TACCTGGGCC GACCGTGGAG GCCTTTTGCC AAAACCGTTT TCATAGACAC CGAAATGGGC GCGCACATCG TGCCCGCAGG CTGGGACCCC TGGAAAGGCG ATAACATGTT CCCCGAAAAG GAAAAAACCG CATTCTACGC CGAATACAAC AGCACAGGCC CGGGTGCCAA CGCCCAGGCA CGTGCACCCT GGACAAAGCA ACTGACCGCC GGCGAAAGGG AGCAATACAC GATAGACCAT ATACTTTCGG GATGGACACC GGGCCGCAAG CTTCGTTTGC AGCCCTCCGG CGTACCCGAC ACGAGCTTTT CCGTGAAGGG CTCCTACCGC CAGGAACACC CCCGACGCCC CGACATCCGC ATTGCAGACG CGCCCAGACC GGCTTCGGTG CAGGAGATAC GCCAGGTGCC CTACCGCACC ACGCCGATGG ACAAGCAGCT GCTGATCGAC ATTTATAAGC CTGCTAAAAA GGGTAAAACG CGCCACCCGG CCGTTCTCAT GGTACACGGT GGTGGCTGGC GCTCGGGCGA CCGCACGCAC AACACCCACC TCGCACGCAA GCTCGCCGCG AAAGGTTACG TCTGTATTAC AGCCGATTAC AGCCTGTCCA CGCAAGCCCT CTACCCCGCC GCCATTCACG ACCTTAAAGC TGCCGTGCGC TGGATGCGCA CCAATGCTCA GGAATACGGC ATTGATACCG CCCGCATTGC CATAATGGGT TTCTCGGCCG GCGGAGAACT GGCCGCTTTT ATAGGTGCCA CAAATGGGAA TGGACAATTT GAAGGCGAGC GCGGTGAAGA AAAGCCATCC AGCACGGTGC AGGCGGTGGT CGACATTGAC GGCATTCTGG CGTTCATCCA CCCCGAATCG GGCGAAGGCA ACGATTCCCG GTCTGTTTCT GCCGCTACTT ACTGGTTTGG TTATCCCAAA ACCGAGCGCC CCGACCTTTG GAAGGAGGCC TCGCCGCTCA CGCACGTGAC CGCTCAAACA CCGCCTTTTC TGTTTATCAA CAGCTCTGTG GACCGGATGC ATGCCGGGCG GGAGGATTTT ATTCAAAAAC TGAATGCATT CGGCACATAC AGCGAGGTAC GGACATTCGC TGATGCCCCG CACACATTTA TGTTTTTTGA TCCGTGGTTT GAGCCTACGC TAGCCACTAT TTCCGGTTTT TTGGATAAGG TGTTAAACCC AAAATCCACA AGCGGAAAGA AATAG
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Protein sequence | MFRKTGQLLL WLLIHFTVRA QVQAVEQQFV VAQDGSGDFK TIQEAVNAVR DHSQIRATIR IKSGTYREKL VIPAWKKNIT LIGESAEHTI ITNNDFSGKD FPGRDFTGNA KFSTYTSYTV LVQANDCTLQ NLTIENTAGR VGQAVALATE GDRIEVFNCR ILGNQDTLYT SKNGRNFFRD CLITGTTDFI FGEATAVFQN CTIHSLTNSY ITAASTTSEQ AFGYVFFNCK LTAAGEATKV YLGRPWRPFA KTVFIDTEMG AHIVPAGWDP WKGDNMFPEK EKTAFYAEYN STGPGANAQA RAPWTKQLTA GEREQYTIDH ILSGWTPGRK LRLQPSGVPD TSFSVKGSYR QEHPRRPDIR IADAPRPASV QEIRQVPYRT TPMDKQLLID IYKPAKKGKT RHPAVLMVHG GGWRSGDRTH NTHLARKLAA KGYVCITADY SLSTQALYPA AIHDLKAAVR WMRTNAQEYG IDTARIAIMG FSAGGELAAF IGATNGNGQF EGERGEEKPS STVQAVVDID GILAFIHPES GEGNDSRSVS AATYWFGYPK TERPDLWKEA SPLTHVTAQT PPFLFINSSV DRMHAGREDF IQKLNAFGTY SEVRTFADAP HTFMFFDPWF EPTLATISGF LDKVLNPKST SGKK
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