Gene Dfer_0486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0486 
Symbol 
ID8224053 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp546951 
End bp548885 
Gene Length1935 bp 
Protein Length644 aa 
Translation table11 
GC content56% 
IMG OID644928364 
ProductPectinesterase 
Protein accessionYP_003084920 
Protein GI255034299 
COG category[G] Carbohydrate transport and metabolism
[I] Lipid transport and metabolism 
COG ID[COG0657] Esterase/lipase
[COG4677] Pectin methylesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.536234 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAGGA AAACCGGTCA GCTCTTGCTA TGGTTGCTCA TCCATTTCAC CGTCCGCGCT 
CAGGTACAGG CCGTTGAGCA GCAATTCGTA GTTGCGCAGG ACGGCAGCGG CGATTTCAAA
ACGATACAGG AAGCGGTGAA TGCCGTACGC GACCATTCGC AGATCCGCGC CACGATACGC
ATTAAAAGCG GGACTTATCG TGAAAAACTG GTGATACCCG CCTGGAAAAA GAATATCACA
CTCATCGGCG AAAGCGCCGA ACATACCATT ATTACAAACA ACGACTTTTC GGGCAAGGAC
TTTCCCGGCC GCGATTTTAC AGGTAATGCG AAGTTTAGCA CCTACACCTC ATACACCGTG
CTCGTGCAGG CCAACGACTG CACCCTTCAA AACCTGACCA TCGAAAACAC CGCAGGCCGT
GTGGGTCAAG CGGTTGCATT GGCGACCGAG GGCGACCGGA TCGAAGTTTT CAATTGTCGC
ATCCTCGGCA ACCAGGATAC GCTCTATACC TCCAAGAACG GCCGGAATTT CTTCCGCGAC
TGCCTTATCA CCGGCACCAC CGACTTCATT TTCGGTGAAG CGACGGCCGT TTTTCAGAAC
TGCACCATCC ACAGTCTCAC CAACTCCTAC ATCACCGCCG CCTCCACAAC CAGTGAACAG
GCATTCGGCT ACGTGTTTTT CAACTGCAAA CTCACCGCAG CCGGCGAAGC CACCAAAGTA
TACCTGGGCC GACCGTGGAG GCCTTTTGCC AAAACCGTTT TCATAGACAC CGAAATGGGC
GCGCACATCG TGCCCGCAGG CTGGGACCCC TGGAAAGGCG ATAACATGTT CCCCGAAAAG
GAAAAAACCG CATTCTACGC CGAATACAAC AGCACAGGCC CGGGTGCCAA CGCCCAGGCA
CGTGCACCCT GGACAAAGCA ACTGACCGCC GGCGAAAGGG AGCAATACAC GATAGACCAT
ATACTTTCGG GATGGACACC GGGCCGCAAG CTTCGTTTGC AGCCCTCCGG CGTACCCGAC
ACGAGCTTTT CCGTGAAGGG CTCCTACCGC CAGGAACACC CCCGACGCCC CGACATCCGC
ATTGCAGACG CGCCCAGACC GGCTTCGGTG CAGGAGATAC GCCAGGTGCC CTACCGCACC
ACGCCGATGG ACAAGCAGCT GCTGATCGAC ATTTATAAGC CTGCTAAAAA GGGTAAAACG
CGCCACCCGG CCGTTCTCAT GGTACACGGT GGTGGCTGGC GCTCGGGCGA CCGCACGCAC
AACACCCACC TCGCACGCAA GCTCGCCGCG AAAGGTTACG TCTGTATTAC AGCCGATTAC
AGCCTGTCCA CGCAAGCCCT CTACCCCGCC GCCATTCACG ACCTTAAAGC TGCCGTGCGC
TGGATGCGCA CCAATGCTCA GGAATACGGC ATTGATACCG CCCGCATTGC CATAATGGGT
TTCTCGGCCG GCGGAGAACT GGCCGCTTTT ATAGGTGCCA CAAATGGGAA TGGACAATTT
GAAGGCGAGC GCGGTGAAGA AAAGCCATCC AGCACGGTGC AGGCGGTGGT CGACATTGAC
GGCATTCTGG CGTTCATCCA CCCCGAATCG GGCGAAGGCA ACGATTCCCG GTCTGTTTCT
GCCGCTACTT ACTGGTTTGG TTATCCCAAA ACCGAGCGCC CCGACCTTTG GAAGGAGGCC
TCGCCGCTCA CGCACGTGAC CGCTCAAACA CCGCCTTTTC TGTTTATCAA CAGCTCTGTG
GACCGGATGC ATGCCGGGCG GGAGGATTTT ATTCAAAAAC TGAATGCATT CGGCACATAC
AGCGAGGTAC GGACATTCGC TGATGCCCCG CACACATTTA TGTTTTTTGA TCCGTGGTTT
GAGCCTACGC TAGCCACTAT TTCCGGTTTT TTGGATAAGG TGTTAAACCC AAAATCCACA
AGCGGAAAGA AATAG
 
Protein sequence
MFRKTGQLLL WLLIHFTVRA QVQAVEQQFV VAQDGSGDFK TIQEAVNAVR DHSQIRATIR 
IKSGTYREKL VIPAWKKNIT LIGESAEHTI ITNNDFSGKD FPGRDFTGNA KFSTYTSYTV
LVQANDCTLQ NLTIENTAGR VGQAVALATE GDRIEVFNCR ILGNQDTLYT SKNGRNFFRD
CLITGTTDFI FGEATAVFQN CTIHSLTNSY ITAASTTSEQ AFGYVFFNCK LTAAGEATKV
YLGRPWRPFA KTVFIDTEMG AHIVPAGWDP WKGDNMFPEK EKTAFYAEYN STGPGANAQA
RAPWTKQLTA GEREQYTIDH ILSGWTPGRK LRLQPSGVPD TSFSVKGSYR QEHPRRPDIR
IADAPRPASV QEIRQVPYRT TPMDKQLLID IYKPAKKGKT RHPAVLMVHG GGWRSGDRTH
NTHLARKLAA KGYVCITADY SLSTQALYPA AIHDLKAAVR WMRTNAQEYG IDTARIAIMG
FSAGGELAAF IGATNGNGQF EGERGEEKPS STVQAVVDID GILAFIHPES GEGNDSRSVS
AATYWFGYPK TERPDLWKEA SPLTHVTAQT PPFLFINSSV DRMHAGREDF IQKLNAFGTY
SEVRTFADAP HTFMFFDPWF EPTLATISGF LDKVLNPKST SGKK