Gene Dfer_0468 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0468 
Symbol 
ID8224034 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand+ 
Start bp530751 
End bp531395 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content49% 
IMG OID644928345 
ProductGTP cyclohydrolase I 
Protein accessionYP_003084902 
Protein GI255034281 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0302] GTP cyclohydrolase I 
TIGRFAM ID[TIGR00063] GTP cyclohydrolase I 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.00942975 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGATGTTG AAGAGATTGG TGACGATCAT TTGTTTTCAG GAATTGAGAC GCCCCTTCGC 
CCCGATGCTT TTGCGATGGA GGATGAACTT AAAATGGAGC TCATCGAGAA GCATTTCCGC 
CATATCATGG AGATTATGGG CCTGGATATG ACCGACGATA GCCTCAAAGG CACGCCAAAA 
AGGGTTGCGA AAATGTATAT CAAGGAAGTT TTCAGCGGCC TGGACCCGAA GAACAAGCCG 
GCTGTTGCAC TTTTTGACAA TAAATATAAA TATAACCAAA TGCTCGTTGA GAAGGACATT 
TCGGTGTTTT CCAACTGCGA GCACCACTTT GTTCCGATTT ACGGAAAGGC GCATGTAGCC 
TATATTTCGA GCGGAAAAGT GATCGGTTTG TCGAAGCTGA ACCGCATTGT CGAGTACTTT 
TCCAAGCGCC CGCAGGTTCA GGAACGCCTC ACCGTGCAGA TCGCCAATGA GCTGAAACAG 
GCATTGCAAA CCGAGGACGT GGCCGTCGTG ATCGACGCGC AGCACATGTG TGTGCAGTCG 
CGAGGCATAC GCGACTCCGG TAGCTCCACC GTTACCGCTT TTTATGGCGG AAAGTTCGAG 
GAAGAGGCGA CCAAGAAGGA GTTTTTGGCC TATTTGGGAA TGTAG
 
Protein sequence
MDVEEIGDDH LFSGIETPLR PDAFAMEDEL KMELIEKHFR HIMEIMGLDM TDDSLKGTPK 
RVAKMYIKEV FSGLDPKNKP AVALFDNKYK YNQMLVEKDI SVFSNCEHHF VPIYGKAHVA 
YISSGKVIGL SKLNRIVEYF SKRPQVQERL TVQIANELKQ ALQTEDVAVV IDAQHMCVQS 
RGIRDSGSST VTAFYGGKFE EEATKKEFLA YLGM