| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0461 |
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| Symbol | |
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| ID | 8224027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 522876 |
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| End bp | 524870 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644928338 |
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| Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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| Protein accession | YP_003084895 |
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| Protein GI | 255034274 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.111701 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCACAC CTGCTGAACA AAAAACCAAT ATCTATTGCC CGTCGCTGAC CGCCTACGAG
CGGCGTCGGA CTATCACCAT CCATATCGGT GACCTCCCGA TGGGCTCCGA TTACCCGATC
CGCGTGCAGT CGATGACCAC CGTGGATACG ATGGATACGC AGGGGTCTAT CGATGAGGTG
ATCCGGATGG TGGAGTCGGG CTGCGAATAT GTGCGCATTA CGGCGCCGAG CGTGAAGGAG
GCTCAAAATC TGGAAAATAT CCGCAATGGA CTGCGTAAGC TGGGCATTCA GGTCCCGCTG
ATCGCAGACA TACATTTTAC ACCCAATGCC GCCGAACTCG CGGCGCGTAT CGTCGAAAAG
GTGCGCATTA ATCCCGGCAA TTATGCCGAT CGCAAGCGTT TTGAAGTGAT CGACTATACC
GATGCCTCGT ACGCCGCCGA GCTGGAACGG ATCCGCGAAA AGTTTATTCC GCTCGTCAAA
ATCTGCAAGG AGTACGGCAC CGCCATGCGC ATCGGAACGA ACCACGGTTC GCTTTCCGAC
CGAATCCTGA GCCGCTACGG CGACACTCCG CTGGGTATGG TGGAGTCGGC GCTGGAATTT
CTGCGGATTT GTGAAGAGTT CAATTATTAC AACATCGCAC TGTCGATGAA GTCGTCCAAC
ACGCAGGTGA TGGTGGAAGC CTACCGCCTG CTCGTGCAGC GGCTGGACGA GGAAGGTTTG
AAGCCCTACC CGCTGCATTT GGGCGTTACC GAGGCCGGTG AGGCAGAAGA CGGCCGCATT
AAATCGGCAG TCGGGATCGG TACGTTGCTG GAAGATGGAT TGGGTGATAC CGTGCGCGTT
TCGCTGACCG AAGCACCCGA AAAAGAAGCC CCTGTGGCGC GCGCATTAAT CGAACGGTAC
GCGACACGCG CCAGCCATGC GCCGATCGAG CCGGTTGACC ATTGTCCGAT CAACCCATTC
CAATACACCC GACGCGATAC GCGGGAAGTG TATAACCTCG GGCATTTGAA CGTGCCCCGC
GTGATCGCCG ACTACTCGAA TATCGAAGTC CAGCAATTGG ATGATCTAAA AAGTATCGGC
CATTTCTTCC TGCCGGTGCC TGATAAATGG GCCATGAACG ACCAGGGCGC CGATTTTATA
TATTCAGGCC AGAAACCGGT GCCATTTATG CTCCCGAACG GCCTGCGCGA AATCCTGGAC
TACCCGCAAT GGCTGGTACA TCCCGAAAAG CACATCAAAT TTCCCCTTTT CAATGTTGCG
GACTGGAATG CGGCAACGGA GGTTTCTTCC GAACTGAATT TTATTGAAGG AGATATCCAT
ACTTTCAACG AGGCTTTTCT GAACGAAGTT GCCGGTAAAA CGAACATCGT CCTCGTCCTG
CACACAGACA ATGCGCACGC GATGCCCGAA ATGCGGCGGT TCTTTTACAA GCTCACAGAA
ATGAAGAACC GGCTACCGGT AATTATCCGG CGGAGTTACC AAACCGACCT GGGTGACCGG
CTGACCTTGT ATTCCGCTAC CGATATCGGC GGATTGCTGG TGGATGGCTT CGGCGATGGC
ACATTGCTTT GCCCCGACTT CTCAGGCGCG GAGCACGCCG AAAAACTGAA AGCCGCTGCG
GCCTATAACG GCATTGCATT CGGTATTTTG CAGGCGGCGC GCACGCGAAT GTCGAAAACC
GAGTACATTT CGTGCCCGTC GTGCGGACGC ACATTGTTTG ATTTGCAGGA GACGACGGCG
ATGATACGCA AGCACACCGA ACATTTGAAA GGTGTTAAAA TAGGCATTAT GGGCTGTATC
GTAAACGGCC CGGGCGAAAT GGCCGATGCC GATTACGGCT ATGTGGGTAT GGGCAAGGAT
AAAATTGCGC TGTACCGCGG GCAGGACGTG ATCAAACGGT CGGTGCACTC ATCGAAAGCC
GTGGAAGAGC TGATCGAGCT CATCCGTGAA GACGGCCGGT GGATTGAGCC GGAGGAGCGT
GAAATTTTGG TTTAA
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| Protein sequence | MITPAEQKTN IYCPSLTAYE RRRTITIHIG DLPMGSDYPI RVQSMTTVDT MDTQGSIDEV
IRMVESGCEY VRITAPSVKE AQNLENIRNG LRKLGIQVPL IADIHFTPNA AELAARIVEK
VRINPGNYAD RKRFEVIDYT DASYAAELER IREKFIPLVK ICKEYGTAMR IGTNHGSLSD
RILSRYGDTP LGMVESALEF LRICEEFNYY NIALSMKSSN TQVMVEAYRL LVQRLDEEGL
KPYPLHLGVT EAGEAEDGRI KSAVGIGTLL EDGLGDTVRV SLTEAPEKEA PVARALIERY
ATRASHAPIE PVDHCPINPF QYTRRDTREV YNLGHLNVPR VIADYSNIEV QQLDDLKSIG
HFFLPVPDKW AMNDQGADFI YSGQKPVPFM LPNGLREILD YPQWLVHPEK HIKFPLFNVA
DWNAATEVSS ELNFIEGDIH TFNEAFLNEV AGKTNIVLVL HTDNAHAMPE MRRFFYKLTE
MKNRLPVIIR RSYQTDLGDR LTLYSATDIG GLLVDGFGDG TLLCPDFSGA EHAEKLKAAA
AYNGIAFGIL QAARTRMSKT EYISCPSCGR TLFDLQETTA MIRKHTEHLK GVKIGIMGCI
VNGPGEMADA DYGYVGMGKD KIALYRGQDV IKRSVHSSKA VEELIELIRE DGRWIEPEER
EILV
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