| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0365 |
|---|
| Symbol | |
|---|
| ID | 8223931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 417793 |
|---|
| End bp | 420501 |
|---|
| Gene Length | 2709 bp |
|---|
| Protein Length | 902 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644928242 |
|---|
| Product | DNA ligase D |
|---|
| Protein accession | YP_003084799 |
|---|
| Protein GI | 255034178 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
|---|
| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.215692 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTTT CCAAGTACAA CGAAAAACGC AAATTCGACA AAACGCCTGA GCCGAAGGGC
GGCAAGGGCG ATAACGACGA GCTTATTTTT GTGATCCAGA AACACGATGC CACGCGCCTG
CATTATGATT TCAGGCTGGA AATGGAAGGC GTGCTCAAAA GCTGGGCGGT CCCGAAAGGT
CCTTCCACGG ACCCGTCGGT GAAACGTCTG GCGATGATGG TGGAAGACCA TCCGTACGAT
TACAAGGATT TCGAGGGCAT TATCCCCAAG GGAAACTATG GCGCGGGGAC GGTTATGGTG
TGGGATTTCG GCACGTATGA GCCCTTGGAA GAAGTAAATG GAAAATTGAA AGCTGTTAAA
GGCAAAAAAG CCCGGGAAAA ACTGGCGCTG AAAGAGCTGC ATTCGGGCTC GCTGAAAGTG
CGGCTGAATG GCAAGAAAGT GAAAGGCGAA TATGCATTGG TGAAAACGAA AGGCATGGAG
GAGAACGCGT GGCTGCTGAT CAAGCACCGC GACAAATACG CATCTGAGGA CGACATTACC
GAGAAAGACC GCTCGGCCGT TTCCCGACGC ACGCTCGCCG GCATCGAAAA GGCCGGTGAC
GCCATTTGGG AAAGCAATCA CGAAGAAAAG AAATCAACCA AAGGCAAAAC GAAAGCCGCT
AAAACCGAAG CGAAAGATCC TGCCGAAGAA GCCGCCACTG AAAAAAAAAG TCCGGACGAG
GACATAGCAG CCATTCTGAA AAAGGGCAAA AAGCAAAAGT TTCCGGATGA CCTGCAACCG
ATGCTCGCTA CGCTGGTAGA CGGGCCGTTC GACGATCCCG GGTGGGAATA TGAGGTAAAA
TGGGATGGAT ACCGGGCATT GGCCTATCTC AACAATGGGG AGGTAAAGCT GCAATCGCGG
AACAGGAAAT CGTTCAGCGA CAAATTTTAT CCTATTTACC AGCAATTGCA GGAATGGAAA
ATCAATGCGG TGATCGACGG CGAAATTGTG GTGATCAACG ACAAAGGCCT TTCGGATTTC
AATGCGCTGC AAAACTGGCG CAGCGAGGCC GACGGCGAAC TGGTGTATTA CGCTTTCGAC
ATTGTGTGGC TCGAAGGCAA GAGCCTTATC CATTTGCCGC TGAGCGAACG AAAAGCTATT
TTGAAAAGCA TTGTGGATGA AAACAGTCCG GTACAGCTCG GTTACAGCGT CGAAGCGGAC
GGTACTGCGT TTTTTGAAGC AGCGCAGAAG ATGGGCTTGG AGGGCATTAT GGCCAAAAAA
TCCGACAGCG AATATTACCC CGGCCTCCGC ACGCGCGACT GGCTAAAAAT CAAGATCAAC
AAACGGCAGG AGGTGATCAT CGCCGGTTAC ACCCTGAACG AAGGCTCATC CAAGCTGTTC
AGCGCGCTGC TGCTGGCTGC CTATGCCGAT GGCGAGCTGC AATATGTGGG CAAAGTAGGC
ACGGGTTTCA AGGAAAAACA GCAAAAGGAG ATGATGGCGC TCTTCAAGCC GCTGATCGCC
AAGAAAAGTC CTTTCAAAGA AACCCCCGAT TACAACAAGC CCTCGCGCTT CCGTCCTAAC
CCGCCCCACG CGAATGCGAC CTGGTTGAAA CCGGAGCTGG TGTGCGAGAT CAGCTTTACG
GAAATTACGG CCGACGGCGT GTTCAGGCAT CCGTCGTTTG AGGGAATGCG CGAGGATAAA
TCGGCGAAGG AAGTGGTGCG GGAGGTGGAA AAACCAGCGG AGGAAATCGT GGACGACGCG
AATGAGCAGA GCGAGACCAT CATCCGGAAA CCGGGCAGAG CGAAACGGAA GACGCTTTTG
AACCCTAAGG AAGAAACGCA GGTGCGCAAA ATCAGCGGAC ATGAGGTGAA ATTCTCAAAT
CTGGGAAAAC TCTACTGGCC CGACGACAAG ATCCAGAAGC GTGAGCTGAT TAACTATTAC
TACCAGGTTG CGCCGCTGAT TCTGCCCTAC CTCGAAAACC GCCCGCTCTC GCTCAACCGC
TTCCCGAACG GCATTAGGGG CAAGAGTTTT TACCAAAAAG ATGTGACGGG CAAAGTGCCG
GAATGGATCG AAACGACGCC CTATGTTTCG GAGGGTGAGA ACAAAAACTT CATGCTCTGC
AACGACGAGG CCACTTTGCT TTATATGGCT AACCTGGGGG CGATTGACGT GAACCCCTGG
AACAGCCGCA TTGAAACGCC CGACAATCCC GACTGGTGCC TGCTCGACCT CGACCCTGAC
ACGACCAACA CTTTCGAACA AGTGATAGAA ACCGCGCAGG CCATTAAAAA CCTCCTGGAT
TCGCTTGGCG TACCATCTTA TTGCAAAACC TCCGGCTCCA CCGGCTTGCA CATTTACATC
CCGCTGGGCG CGAAATACAG CTACGACCAA TGCCAGCTCT TCGCCGAATG GGTAGCTGGC
CAGGTGCAGC AGCAGCTCCC CGATTTCACG AGTGTGGAGC GCCTGACCAA GAACCGCAAG
GGCAAGCTTT ACATCGATTA CCTCCAAAAT CGCCCCAAGG CGACATTGGC CGCCCCCTAT
TCCGTACGCC CGAAACCCGG CGCGACGGTG TCGATGCCCT TGCATTGGGA GGAGGTGAAA
GTGGGCCTGC AACTGAAAGA TTTCACGATT TACAATGCCA TGGACCGCAT TCAACGGGAA
GGCGACCTTT TCAAACCGGT GTTGGGTGAA GGGATCGACC TGGAAGAGGT GATTGCTAAA
ATGGGCTGA
|
|---|
| Protein sequence | MTLSKYNEKR KFDKTPEPKG GKGDNDELIF VIQKHDATRL HYDFRLEMEG VLKSWAVPKG
PSTDPSVKRL AMMVEDHPYD YKDFEGIIPK GNYGAGTVMV WDFGTYEPLE EVNGKLKAVK
GKKAREKLAL KELHSGSLKV RLNGKKVKGE YALVKTKGME ENAWLLIKHR DKYASEDDIT
EKDRSAVSRR TLAGIEKAGD AIWESNHEEK KSTKGKTKAA KTEAKDPAEE AATEKKSPDE
DIAAILKKGK KQKFPDDLQP MLATLVDGPF DDPGWEYEVK WDGYRALAYL NNGEVKLQSR
NRKSFSDKFY PIYQQLQEWK INAVIDGEIV VINDKGLSDF NALQNWRSEA DGELVYYAFD
IVWLEGKSLI HLPLSERKAI LKSIVDENSP VQLGYSVEAD GTAFFEAAQK MGLEGIMAKK
SDSEYYPGLR TRDWLKIKIN KRQEVIIAGY TLNEGSSKLF SALLLAAYAD GELQYVGKVG
TGFKEKQQKE MMALFKPLIA KKSPFKETPD YNKPSRFRPN PPHANATWLK PELVCEISFT
EITADGVFRH PSFEGMREDK SAKEVVREVE KPAEEIVDDA NEQSETIIRK PGRAKRKTLL
NPKEETQVRK ISGHEVKFSN LGKLYWPDDK IQKRELINYY YQVAPLILPY LENRPLSLNR
FPNGIRGKSF YQKDVTGKVP EWIETTPYVS EGENKNFMLC NDEATLLYMA NLGAIDVNPW
NSRIETPDNP DWCLLDLDPD TTNTFEQVIE TAQAIKNLLD SLGVPSYCKT SGSTGLHIYI
PLGAKYSYDQ CQLFAEWVAG QVQQQLPDFT SVERLTKNRK GKLYIDYLQN RPKATLAAPY
SVRPKPGATV SMPLHWEEVK VGLQLKDFTI YNAMDRIQRE GDLFKPVLGE GIDLEEVIAK
MG
|
|---|
| |