| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0339 |
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| Symbol | |
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| ID | 8223905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 390595 |
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| End bp | 393858 |
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| Gene Length | 3264 bp |
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| Protein Length | 1087 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644928217 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003084774 |
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| Protein GI | 255034153 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.135408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000558504 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCGCAAT CGATACGAAG TTGTTTGTTG GCACTGCTGT GCGTGCTGTT ATGTTCGTAC
CATGCAGCTG CCCAGGACAG GCGTGTGAAA GGGAAAGTGG TTGACGAATC CAATGCCGGG
ATCCCGGGCG TGAGCGTGCT CATGAAGGGC AGCACCAACG GCACAAACAC CGATGTGGAC
GGCAATTTCA GCATTGCGCT CCCGGCGGGG AGCCAGGTGC TCACGGTGTC GTCCATCGGG
CACGTTACGC AGGATGTGAA CGTGTCGGCG GCGGCGACGG AAGTGACTGT GAAGCTCAAA
GCCGATGTGA AAAGCCTCGG CGAAGTGGTG GTAACGGCGC TGGGCGTGCA GCGCAGCACG
CGCAATGTGG GCTACGCAAT CCAGCAGATC GACGGCGGCG GCATTCAGGA AGCCCGCGAG
GTGAACTACA TCAACTCATT GCAGGGCAAG CTGGCGGGCG TACAGATCGG CGGCAACAGC
GGTTCGATGG GCGGCTCGTC GAGGGTCACG ATCCGCGGTT TGAAATCCAT TTCCGGAAAC
AATAATGCAT TGTTTATCGT CGACGGCGTG CCTATGGCCA ATATGAACAT GAATTCATAC
GGCGTAACGG GCGGACAAGG CACCGGCGGC GGCGGGTACG ACTACGGCAA CCCGGCGCAG
CTGCTCAATC CGAACGACGT GGAGAACATT TCGGTGCTGA AAGGCGCTGC CGCGACGGCG
CTTTACGGCA GCCGCGGCCA GAATGGGGTC ATTTACATTA CAACCAAAAC CGGCAAGGGC
TCGGGCAAGC TCTCGCTGAA CTATGACCTG AACATCCAGG CCGACCAGGT GTCGCTGTTG
CCCAAATTCC AGAACCTCTA TGGTGGCGGC GGGAGTTCGA ATTTCACGAA GCTGTATGTC
GATGCCAACC CGACGGGCTT TTTGCCCGGA GGCGGTACTT ACGATGACGG CGACGGCAAA
GGCCGCTACG ACCTCATTCC CGATTACGGT ACCGACGAAT CGTGGGGGCC GAAGATGGAG
GGCCAGCTGG TGCGGCATTA CTGGTCGTGG GACCAGGACC GGAACAACCC GAATTTCGGT
AAAACCGCTC CTTGGAGCCC TCAGCCTGAT AATGCGAAGC AGTTTTTCAA AACCGGGGTA
ACGTTTTCAA ACAACCTCTC GGTGGCCAGC AGCGGCGACA ATGGCTCGAT CCGCTTCTCG
GTCGGACAAA CGAAGCAAAA CTTCATTTAC CCGGGCAGCA GCCTGAGCCG GTTCTTTATC
AGCCTCAATT CGGTGTATAA GTTCACCGAG AAATTTACTT TCAGCGGCGG TATCAACTAT
ATCAACGACC ATTCGAAAGG CAGGCCGGGA ACGGGCTTTT TCGGCAACAA CCCGATGCTG
TTTTACGTGA TGTTCGGCCA GCGGCAGATC GACGATGCCT ATTTGCGCAA TTACAAATAC
GCCGACGGCA CCGAGCAATC ATGGAACCGG ACAGCCTGGA ATATCCAAAA GCCGGCATTT
ACCCAAAACC CTTATTGGAA CCAGTACGAA AACTATAATA CCGACCAGAA TAACCGCTAT
TTCGGTAATG CGGGCCTGAC CTACAAGCTT ACCGACTGGC TCTCCGCCGA CCTTCGCGTG
TTCTCCGATT ATCTCAACCA TTTGGACGAG GTAAGAGGCG CCAAAGGTTT CTTTGTAGGC
TCCTATGCAC GGCGCGTGGT GGTGAACAAC GAAAACAACT ACCAGGGAAC TCTGAACATC
AACAAAGAAT TCGCCGACTC TAAACTGACG CTCGAAGCGG TGGCCGGGGG GAACATATTG
CGGATTAAAT CGAACATCGA CGCCGGCAAT ACGAATGGCG GCCTGCAAAA TCCGATGGTG
TATGTGCTGC AAAACTCGGT AACGCCCGCG ACGGTTTCCA ATGCTTACGG CAACAAGCAG
ATCAATTCCG TTTTCGGGTC GGTTACTTTG GGGTACAACA AGTTTTTGTA CCTGACAGCG
ACTGGCCGTA ACGACTGGGC ATCCACCCTG AAACAAACCG GCAACTATTC CTATTTCTAT
CCGTCGGTAG CGGGGTCGTT TATCTTTTCG GACCTGATTA CCGATGCCAA ATGGCTCACA
CTCGGGAAAG CGCGCTTGTC GTATGCGCGG GTGGGCAACG ATGCGGACCC GTATTCGGTT
TCGCGGTATT ACGATTACGT AGCGCCATTT GACACCTATC CGCTGCAAAG CACTTCGGAC
AAGCTGTTCA ACAGCCGCCT TAAACCGGAA TTGTCTTCGG AAACGGAAGC GGGGGTGGAT
TTCAAGTTTT TCAACGACCG TCTGGGTGCC AATTTTACCT ATTATAACCG CAAAACAAGA
AACCAGATCT GGAATGTGCA AATCCCATCC GAAAGCGGTT TCACAACCAA GGTGGTGAAT
GGCGGGACGG TTCAAAATAA GGGTATCGAG CTTACATTAT CGGCCACGCC GGTGATGACC
ACCAATTTCA GCTGGCGCGT GGGCCTCAAT TTCTCCAAAA ACAAAAACAT CGTCCTTGAC
CTGAACAGCA CTAACGACAA TATCCAGGGC ATCGAAAGGT TCATCATCGG TACCGAACGC
CGGACGAACA AAGTGTCGAT GGTTGCGCAG AAAGGAATGT CGCTCGGCAC CATGCTTGGG
ACGGATTATG TGTACGACGC CAATGGCAAC AAAACCGTGG CCGACAACGG GACTTATAAT
GTAACCCCCA CACCGGTGAT CATCGGCGAT GCCAATCCGG ATTTCATAGG GGGCTTGTCG
AATATGCTGA GTTACAAGAA TTTTTATCTG TCGGCACTTG TGGATTTTCA AAAGGGCGGT
GATTTCTTTT CCTATACCAA TTTGTACGGA AATAAATCGG GCATGCTGAA AGAAACCGCT
GAAAACGGAA TCCGTGAAAA CGGCGTGGTG AACCCGGGTG TGAAGGCGGA TGGCCTGCCG
AACGACATTG TGGTACCGGC GCGGACGCAT TTCAATGCAG ATGGCGGTAA CCGCATCAGC
AAAGCCAACC TGTACGACGG CAGCTTCATT TACCTCCGCG AGGTGCGGCT GGGCTGGTAC
CTGCCCGATG GCTGGGCGAA GAAGATCCGC ATGCAGGCTT TGCGGGTAAC ACTTACCGGA
CGGAACCTCT GGCTTATCAA AAGCAATGCA CCGAACGTCG ATCCGGCCAA TATTACCAAT
TCCATCAGCA ACCAGATCGG CTTCGAGGGC GGTGCATTGC CGCCGACCCG CAGCTATGGC
GTGAACCTGA ATGTTACTTT CTGA
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| Protein sequence | MAQSIRSCLL ALLCVLLCSY HAAAQDRRVK GKVVDESNAG IPGVSVLMKG STNGTNTDVD
GNFSIALPAG SQVLTVSSIG HVTQDVNVSA AATEVTVKLK ADVKSLGEVV VTALGVQRST
RNVGYAIQQI DGGGIQEARE VNYINSLQGK LAGVQIGGNS GSMGGSSRVT IRGLKSISGN
NNALFIVDGV PMANMNMNSY GVTGGQGTGG GGYDYGNPAQ LLNPNDVENI SVLKGAAATA
LYGSRGQNGV IYITTKTGKG SGKLSLNYDL NIQADQVSLL PKFQNLYGGG GSSNFTKLYV
DANPTGFLPG GGTYDDGDGK GRYDLIPDYG TDESWGPKME GQLVRHYWSW DQDRNNPNFG
KTAPWSPQPD NAKQFFKTGV TFSNNLSVAS SGDNGSIRFS VGQTKQNFIY PGSSLSRFFI
SLNSVYKFTE KFTFSGGINY INDHSKGRPG TGFFGNNPML FYVMFGQRQI DDAYLRNYKY
ADGTEQSWNR TAWNIQKPAF TQNPYWNQYE NYNTDQNNRY FGNAGLTYKL TDWLSADLRV
FSDYLNHLDE VRGAKGFFVG SYARRVVVNN ENNYQGTLNI NKEFADSKLT LEAVAGGNIL
RIKSNIDAGN TNGGLQNPMV YVLQNSVTPA TVSNAYGNKQ INSVFGSVTL GYNKFLYLTA
TGRNDWASTL KQTGNYSYFY PSVAGSFIFS DLITDAKWLT LGKARLSYAR VGNDADPYSV
SRYYDYVAPF DTYPLQSTSD KLFNSRLKPE LSSETEAGVD FKFFNDRLGA NFTYYNRKTR
NQIWNVQIPS ESGFTTKVVN GGTVQNKGIE LTLSATPVMT TNFSWRVGLN FSKNKNIVLD
LNSTNDNIQG IERFIIGTER RTNKVSMVAQ KGMSLGTMLG TDYVYDANGN KTVADNGTYN
VTPTPVIIGD ANPDFIGGLS NMLSYKNFYL SALVDFQKGG DFFSYTNLYG NKSGMLKETA
ENGIRENGVV NPGVKADGLP NDIVVPARTH FNADGGNRIS KANLYDGSFI YLREVRLGWY
LPDGWAKKIR MQALRVTLTG RNLWLIKSNA PNVDPANITN SISNQIGFEG GALPPTRSYG
VNLNVTF
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