| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0301 |
|---|
| Symbol | |
|---|
| ID | 8223867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 342412 |
|---|
| End bp | 344292 |
|---|
| Gene Length | 1881 bp |
|---|
| Protein Length | 626 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644928179 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003084736 |
|---|
| Protein GI | 255034115 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.788503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.462507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA GTTATAAAAA TTGGATTTTT CTGGCGGCGC TGGCAACAAC CGGGCTGGTG
TCGTGTGACA CTGACTTTCT GGATGTAACG CCGCCCACCG AAATCCCGAC CGAAGAGGTT
TGGAAAGACG GTGCCCTGGC CGAAGGTTTT GTGACGGGCA TTTACCAGGG ATTGCAGCAG
GGCGGATTCA GCGAGCAAAT GCTGGCGTCG CTCACTGATG AGGCTGTATT TACCCACACA
GGCCGCAATA TCAACACGAT CAACGAAGGA AGTTTGAGCC CTTCCAACCT GGGCTGGGTG
GATGATACCT ACGGATGGAG CCCGATGTAC TCCCGCATCC GCGCCACTAA CCAGGCGATC
CAGGAGCTGC CGACTTCGAC TTTCGCGGAT CAAACCCTGA AAGACCGATT GAAAGGCGAG
GCGCACTTCC TGCGTGCATA TTACTACCAG CAGCTTCTCC GCTACTACGG CTCCGTTCCG
CTCATCACGA AAGTATACGA GCTGAACGAG GACTATTCAG TGCCTCGTAA CACATGGGAA
GAATGTGTGA ACTTCATTGC GGCCGACTGC GACAGCGCTG CTGCATTGCT GAAAGGCAAA
ACCGAGCAGA AAGGCCGTGC TACGGAAGTG GCTGCATTGG CATTGAAATC ACGCGTGCTG
CTTTACGCTG CGAGCGACCT GCACGATGTG GCTACCGCAA AAGCAAAATC TGCTGTGCTG
GCCGGGTATA CCAATCCTGA ATTCTTCGGC TACACTTCCG GCGACCGAAA GGCGCGCTGG
CAGGCTGCGC AAACTGCTGC TAAGGCTGCA ATGGATGCCA AAGCAGGTTA TAAACTGAAC
CTGACCGCGC CGGTAACACC TGAGCAAGGC AAGATCAACT ACATTTCAAT CGCGATGGCG
GGTTACAGCG CCGACAAGTC TCTCGACGCT GCCGGCGGTG AGGATGTGAT CTTCGGACGT
TATTTCACGC CGAGCCAAAC CTCCGACGGT GCACGTCAGA CCGGTTTGAA CAACGGTCCG
AACGGCTACC ACAACTGGGC GGGTAACACG CCGATAGGCT TGCTGGTGGA CGACTACGAA
ATGATGGACG GAACGAAGTT CTCGTGGACC AACCCGACCC ACAAAGCCAG CCCGTATGTG
AACCGCGACC CGCGTTTCTA TGCAACGGTC ATGTACGACG GTGCGCCCTG GAAGCCACGT
CCATCCGACG CGAAAGACCC TGCTAACCAG ATCCAAACCG GCTCATACGA CCTGTTGGAT
GACAAAGGGG CGCTCTTCAA CCGCAAAGGA CTGGATACCC GCAGCAGCAC GATCGAAGAC
TGGAACGGAA GCCGCACAGG CTATTACATG CGCAAGTTCA TCGACCCGAA CCCTGCATTG
TATGACAACA CCGACCGCCA GAACATCCCT TGGCCGTTCA TCCGCGTAAC CGAGGTGGCG
TTCAACTACA TCGAGGCGAG CATCGAGCTT GGCCAGGATG CGGTAGCGCT TGACCTGCTG
AACAAAATCC GTTTCCGCGC CGGGATGCCT GCATTGAAAG TTTCAGGCAC TGCATTGCGT
GATGCTTACC GTCACGAAAG ACGCATTGAA ATGGCCTACG AAGAGCAGCG CTACCACGAT
GCACGCCGCT GGATGATCGC GCCTACCACA CTGGGCCGTC CGTTGCAATT CATCACCGTG
ATCGGCAAAT TCAAGCCAGG CAAGTCGATG AGGGAGCCGT ACCACTACGA TCCGACCGTG
TACGACTATA CTTACACGCC GACGGAGGAC AAATCGCACG AAAACCGCAC TTGGGTGGAT
AAAATGTACT TCCGCCCATT CAGCCGCGAT GAAATAAACC GTAATGCGAA GCTGGTTCAG
AACCCGGGCT ACGATAAGTA A
|
|---|
| Protein sequence | MKLSYKNWIF LAALATTGLV SCDTDFLDVT PPTEIPTEEV WKDGALAEGF VTGIYQGLQQ
GGFSEQMLAS LTDEAVFTHT GRNINTINEG SLSPSNLGWV DDTYGWSPMY SRIRATNQAI
QELPTSTFAD QTLKDRLKGE AHFLRAYYYQ QLLRYYGSVP LITKVYELNE DYSVPRNTWE
ECVNFIAADC DSAAALLKGK TEQKGRATEV AALALKSRVL LYAASDLHDV ATAKAKSAVL
AGYTNPEFFG YTSGDRKARW QAAQTAAKAA MDAKAGYKLN LTAPVTPEQG KINYISIAMA
GYSADKSLDA AGGEDVIFGR YFTPSQTSDG ARQTGLNNGP NGYHNWAGNT PIGLLVDDYE
MMDGTKFSWT NPTHKASPYV NRDPRFYATV MYDGAPWKPR PSDAKDPANQ IQTGSYDLLD
DKGALFNRKG LDTRSSTIED WNGSRTGYYM RKFIDPNPAL YDNTDRQNIP WPFIRVTEVA
FNYIEASIEL GQDAVALDLL NKIRFRAGMP ALKVSGTALR DAYRHERRIE MAYEEQRYHD
ARRWMIAPTT LGRPLQFITV IGKFKPGKSM REPYHYDPTV YDYTYTPTED KSHENRTWVD
KMYFRPFSRD EINRNAKLVQ NPGYDK
|
|---|
| |