Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_0300 |
Symbol | |
ID | 8223866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 339162 |
End bp | 342401 |
Gene Length | 3240 bp |
Protein Length | 1079 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644928178 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003084735 |
Protein GI | 255034114 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.11238 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGATTT CTGAACGGGA AAAGTACCGT AGCCTAACGC GGTATTTTTA CTCCCTTCTG TTGACCCTGT TGGTCATGAC CGGTGCATAC GCTCAGGATG TAACGGTGAA GGGAAAAGTG AATGATGAGC AAGGGCAGGG GTTGCCCGGG GTGAGTATCC TGGTAAAAGG GACCTCCGCA GGGACGGTCA CCGACATCGA AGGTAACTAC ACAGTGAATG CGCCGGGTAC GGCAACGCTC GTATTTTCGT TCATCGGCTA CATTACGCAG GAGATTCCAC TGGCCAACAA AACGAGCCTG GACGTGAAGA TGTTGGCAGA TACCAAAGCG CTCGACGAGG TCGTGGTTGT GGGTTATGGT ACTGCTAAAA AAGCAACCCT TACCGGTTCG GTGACGGCCG TGAAAGGTGC TGAACTGCAA AAAGCGCCTT CAACCAACCT TTCCAACACA TTGGGAGGCC GGTTGCCGGG TGTTTCGGCG GTGCAGGCGA GCGGCGAGCC CGGCTATGAT GGCTCGGCGA TCCGCATCCG CGGTACCAAC TCCCTGGGTA ACAGCAATGC GCTCATCGTG GTGGATGGTG TGCCCAACCG TTCCGGTGGT CTGGACCGTC TGAACCCTGC CGACATCGAG AGTATTTCGG TACTGAAAGA TGCGGCGGCG GCGATTTACG GTTCGCGTGC GGGTAACGGG GTAATCCTCA TTACCACCAA ACGCGGAAAA AGCGGCAAGC CACAGCTTTC GTACGACCTG AACCTCGGTA TTGCACAGCC TACACGTATT CCTCAAATGT CGAACGCGGC GGAATATGCC ACGATCCGCA ATGAATTGCA GATCTACGAT AACCTGCCGG TAAGCCAGTG GGGCGGTGCA TTGCAAGGCT TCAACACCAA CGGTGCCTAC ACCCGCACCG ACAATGGCAA TGTGCTGAAT GCGGTATTTA CCCCGACCGA CCTTCAAAAA TTCCGCAGCG GGACCGATCC GCTCACGCAC CCGAACACCG ACTGGTACGG TTCGGTGATC CGCAACTGGT CGCCGCAGCA GCGCCACAAC CTGCAATTGA CCGGCGGTAG CGAGAACATC AAATACCTTG CGTCATTGGG TTATATCAAC CAGGAGGGTA ACTATGTAAA CTCTGCGACC GGTTACAAGC AATACGACAT GCGTGTGAAC CTGGACACGA AGATCAACAA ATATGTTACT GCCAACCTCG GCGTAGTGTT GCGCGAAGAG TTCCGCCGCT TCCCGAACGG CGGTGGCGCA GGCGACATTT TCCGTATGCT CATGCGCGGT AAGCCTACCG AAATCGCGAT CTGGCCGGAT GGCCGTCCTG GTCCCGACAT CGAAAACGGA CAGAACCCGG CGGTAATCAC GACCAACACG ACCGGTTACA ACCACGACAA ACGCGACTAC ATCCAGACCA ACGGTTCACT GGACATCCAG ATTCCGGGTG TGGAAGGCCT GAAAGTGACG GCAATGGCCG CTATTGACAA GCAGATCCGT CGCCAGAAAT CGTTCCAGAA GCCCTGGACG CTTTATAACT GGGACAAACG CAGCTACGAA GCCGACGGTG TAACACCGGT ACTCACAGGC GCAATCCGTT CGACATTCAA CGATCCCCGC CTCACCGAAA CTTCTTCACA GGAGCTTTCG ATCCAGCTTA CCGGCCAGGC TTCCTACGAG AAGACATTCG GCTCGCACAA TTTCAATGCG ATGGTAGGTA TCCAGCGCGA AACAGTGGAT GCTGACGGTT TCTTCGCATT CCGCCGCTAC TTCATCTCTC CGGTTGTTGA CCAGCTTTTC GCAGGTGGTA CGCCCGAGCA GAACATCGGT AACTCCGGCA CCAACAACGG TGATTTGTTC AAAAGAGCGC GTTTGAGCTA CTTTGGTCGC GTGGGATACA ACTATAAGGA GAAATACCTG GCAGAGTTCC TGTGGCGTGC GGATGGTTCG TATGTATTCC CGAAACAGGG CCGCTTCGGA TTCTTCCCGG GTGTGTCGGC GGGCTGGCGT ATTTCCGAAG AGGACTTCTG GAAAAACAAT ATCCGCTTCG TGAACAACGT GAAGCTGCGT GCATCGTGGG GCCAGATGGG TGCAGAGCCT TATCTGCTCG GTACCGAAAC ATTGGCGGAA TACCAATACC TGAACACGAT GGGCTTCGGA ACCTACATTC TCAACGATCA GGTTGTGAAG ACTTTGCTTG AAACCCGTGT TGCCAACAAC CAATTCACCT GGGAGGTGGC CAACAACAGC AACTTCGGTA TCGAAGGTAC ATTGTGGAAA GATCGCATTG CATTTGAGAT CGACTACTTC ATCAATAACC GTTCGAACAT CCTGATCCCG AAAACAGGTT CTACGCCTTC TACGGCGGGT ATCGATGGCA AGCTTCCTCC CGAAAACCTC GGAAAGCTGC AAAACAAAGG GTTTGAATTC AAGGTGAGCT ACGATGGCAG CGTCGACAAC TTTACTTACT CGGTAGGTGT GAATGGTGGT TATGCCAAAA ACACGATCAA ATACTGGAAC GAAACACCGG GTGTGCCTTC TTACCAGTTT ACAACCGGAC GTCCGTACCA GGCATTCCTG GCTTACCAGT ACGACGGCGT GTTCCGCGAT CAGGCGGAGA TCGATGCCAA CACGATCGAC TACTCCGGTA TCACGGGTAC GCTGCGTCCG GGCGATATGA AGTTCAAGGA CGTGAGCGGC GATGGCAAGA TCACGAAGGA TGATATGGTA CGGTCGGAAA AGACCAACCG TCCGCAATTC ACCGGTGGTG TGAACATCAA CCTCGGCTAC AAGGCATTCG ACCTGTCGAT CCTGTTCCAG GGTGCTGCGG GAGGTTTGCA ATATGTAGGA CAGACCGAGT CGGGTGACAT TGGTAACTAC CTGAAATACG CTTACGACAA CCGTTGGACA ATCGACAACC CAAGCTCGAC AGACCCACGC CTTGCTAACC GTAACAATAC GTATTATACC AACCTCACCA ATGCGGACTC ACCAGGTGCC AACACCTATT ACCTGAAAAG CAATAATTAC CTGCGTTTGA AAAACATCGA ACTGGGTTAT AACCTGCCTT CGGAACTGGG CTCGAAAATC GGCGTGAGCA ACCTGCGCGT GTATGTGAAC GGTTTGAACC TGTTCACGAT CGACAAGATC AAGATCTGGG ACCCGGAAGC AACTTCGACC AACGGACAAT ACTATCCGCA GTCGCGAGTT CTTAATGCAG GTGTACGTGT AACTTTCTAA
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Protein sequence | MRISEREKYR SLTRYFYSLL LTLLVMTGAY AQDVTVKGKV NDEQGQGLPG VSILVKGTSA GTVTDIEGNY TVNAPGTATL VFSFIGYITQ EIPLANKTSL DVKMLADTKA LDEVVVVGYG TAKKATLTGS VTAVKGAELQ KAPSTNLSNT LGGRLPGVSA VQASGEPGYD GSAIRIRGTN SLGNSNALIV VDGVPNRSGG LDRLNPADIE SISVLKDAAA AIYGSRAGNG VILITTKRGK SGKPQLSYDL NLGIAQPTRI PQMSNAAEYA TIRNELQIYD NLPVSQWGGA LQGFNTNGAY TRTDNGNVLN AVFTPTDLQK FRSGTDPLTH PNTDWYGSVI RNWSPQQRHN LQLTGGSENI KYLASLGYIN QEGNYVNSAT GYKQYDMRVN LDTKINKYVT ANLGVVLREE FRRFPNGGGA GDIFRMLMRG KPTEIAIWPD GRPGPDIENG QNPAVITTNT TGYNHDKRDY IQTNGSLDIQ IPGVEGLKVT AMAAIDKQIR RQKSFQKPWT LYNWDKRSYE ADGVTPVLTG AIRSTFNDPR LTETSSQELS IQLTGQASYE KTFGSHNFNA MVGIQRETVD ADGFFAFRRY FISPVVDQLF AGGTPEQNIG NSGTNNGDLF KRARLSYFGR VGYNYKEKYL AEFLWRADGS YVFPKQGRFG FFPGVSAGWR ISEEDFWKNN IRFVNNVKLR ASWGQMGAEP YLLGTETLAE YQYLNTMGFG TYILNDQVVK TLLETRVANN QFTWEVANNS NFGIEGTLWK DRIAFEIDYF INNRSNILIP KTGSTPSTAG IDGKLPPENL GKLQNKGFEF KVSYDGSVDN FTYSVGVNGG YAKNTIKYWN ETPGVPSYQF TTGRPYQAFL AYQYDGVFRD QAEIDANTID YSGITGTLRP GDMKFKDVSG DGKITKDDMV RSEKTNRPQF TGGVNINLGY KAFDLSILFQ GAAGGLQYVG QTESGDIGNY LKYAYDNRWT IDNPSSTDPR LANRNNTYYT NLTNADSPGA NTYYLKSNNY LRLKNIELGY NLPSELGSKI GVSNLRVYVN GLNLFTIDKI KIWDPEATST NGQYYPQSRV LNAGVRVTF
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