| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0300 |
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| Symbol | |
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| ID | 8223866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 339162 |
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| End bp | 342401 |
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| Gene Length | 3240 bp |
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| Protein Length | 1079 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644928178 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003084735 |
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| Protein GI | 255034114 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.11238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGATTT CTGAACGGGA AAAGTACCGT AGCCTAACGC GGTATTTTTA CTCCCTTCTG
TTGACCCTGT TGGTCATGAC CGGTGCATAC GCTCAGGATG TAACGGTGAA GGGAAAAGTG
AATGATGAGC AAGGGCAGGG GTTGCCCGGG GTGAGTATCC TGGTAAAAGG GACCTCCGCA
GGGACGGTCA CCGACATCGA AGGTAACTAC ACAGTGAATG CGCCGGGTAC GGCAACGCTC
GTATTTTCGT TCATCGGCTA CATTACGCAG GAGATTCCAC TGGCCAACAA AACGAGCCTG
GACGTGAAGA TGTTGGCAGA TACCAAAGCG CTCGACGAGG TCGTGGTTGT GGGTTATGGT
ACTGCTAAAA AAGCAACCCT TACCGGTTCG GTGACGGCCG TGAAAGGTGC TGAACTGCAA
AAAGCGCCTT CAACCAACCT TTCCAACACA TTGGGAGGCC GGTTGCCGGG TGTTTCGGCG
GTGCAGGCGA GCGGCGAGCC CGGCTATGAT GGCTCGGCGA TCCGCATCCG CGGTACCAAC
TCCCTGGGTA ACAGCAATGC GCTCATCGTG GTGGATGGTG TGCCCAACCG TTCCGGTGGT
CTGGACCGTC TGAACCCTGC CGACATCGAG AGTATTTCGG TACTGAAAGA TGCGGCGGCG
GCGATTTACG GTTCGCGTGC GGGTAACGGG GTAATCCTCA TTACCACCAA ACGCGGAAAA
AGCGGCAAGC CACAGCTTTC GTACGACCTG AACCTCGGTA TTGCACAGCC TACACGTATT
CCTCAAATGT CGAACGCGGC GGAATATGCC ACGATCCGCA ATGAATTGCA GATCTACGAT
AACCTGCCGG TAAGCCAGTG GGGCGGTGCA TTGCAAGGCT TCAACACCAA CGGTGCCTAC
ACCCGCACCG ACAATGGCAA TGTGCTGAAT GCGGTATTTA CCCCGACCGA CCTTCAAAAA
TTCCGCAGCG GGACCGATCC GCTCACGCAC CCGAACACCG ACTGGTACGG TTCGGTGATC
CGCAACTGGT CGCCGCAGCA GCGCCACAAC CTGCAATTGA CCGGCGGTAG CGAGAACATC
AAATACCTTG CGTCATTGGG TTATATCAAC CAGGAGGGTA ACTATGTAAA CTCTGCGACC
GGTTACAAGC AATACGACAT GCGTGTGAAC CTGGACACGA AGATCAACAA ATATGTTACT
GCCAACCTCG GCGTAGTGTT GCGCGAAGAG TTCCGCCGCT TCCCGAACGG CGGTGGCGCA
GGCGACATTT TCCGTATGCT CATGCGCGGT AAGCCTACCG AAATCGCGAT CTGGCCGGAT
GGCCGTCCTG GTCCCGACAT CGAAAACGGA CAGAACCCGG CGGTAATCAC GACCAACACG
ACCGGTTACA ACCACGACAA ACGCGACTAC ATCCAGACCA ACGGTTCACT GGACATCCAG
ATTCCGGGTG TGGAAGGCCT GAAAGTGACG GCAATGGCCG CTATTGACAA GCAGATCCGT
CGCCAGAAAT CGTTCCAGAA GCCCTGGACG CTTTATAACT GGGACAAACG CAGCTACGAA
GCCGACGGTG TAACACCGGT ACTCACAGGC GCAATCCGTT CGACATTCAA CGATCCCCGC
CTCACCGAAA CTTCTTCACA GGAGCTTTCG ATCCAGCTTA CCGGCCAGGC TTCCTACGAG
AAGACATTCG GCTCGCACAA TTTCAATGCG ATGGTAGGTA TCCAGCGCGA AACAGTGGAT
GCTGACGGTT TCTTCGCATT CCGCCGCTAC TTCATCTCTC CGGTTGTTGA CCAGCTTTTC
GCAGGTGGTA CGCCCGAGCA GAACATCGGT AACTCCGGCA CCAACAACGG TGATTTGTTC
AAAAGAGCGC GTTTGAGCTA CTTTGGTCGC GTGGGATACA ACTATAAGGA GAAATACCTG
GCAGAGTTCC TGTGGCGTGC GGATGGTTCG TATGTATTCC CGAAACAGGG CCGCTTCGGA
TTCTTCCCGG GTGTGTCGGC GGGCTGGCGT ATTTCCGAAG AGGACTTCTG GAAAAACAAT
ATCCGCTTCG TGAACAACGT GAAGCTGCGT GCATCGTGGG GCCAGATGGG TGCAGAGCCT
TATCTGCTCG GTACCGAAAC ATTGGCGGAA TACCAATACC TGAACACGAT GGGCTTCGGA
ACCTACATTC TCAACGATCA GGTTGTGAAG ACTTTGCTTG AAACCCGTGT TGCCAACAAC
CAATTCACCT GGGAGGTGGC CAACAACAGC AACTTCGGTA TCGAAGGTAC ATTGTGGAAA
GATCGCATTG CATTTGAGAT CGACTACTTC ATCAATAACC GTTCGAACAT CCTGATCCCG
AAAACAGGTT CTACGCCTTC TACGGCGGGT ATCGATGGCA AGCTTCCTCC CGAAAACCTC
GGAAAGCTGC AAAACAAAGG GTTTGAATTC AAGGTGAGCT ACGATGGCAG CGTCGACAAC
TTTACTTACT CGGTAGGTGT GAATGGTGGT TATGCCAAAA ACACGATCAA ATACTGGAAC
GAAACACCGG GTGTGCCTTC TTACCAGTTT ACAACCGGAC GTCCGTACCA GGCATTCCTG
GCTTACCAGT ACGACGGCGT GTTCCGCGAT CAGGCGGAGA TCGATGCCAA CACGATCGAC
TACTCCGGTA TCACGGGTAC GCTGCGTCCG GGCGATATGA AGTTCAAGGA CGTGAGCGGC
GATGGCAAGA TCACGAAGGA TGATATGGTA CGGTCGGAAA AGACCAACCG TCCGCAATTC
ACCGGTGGTG TGAACATCAA CCTCGGCTAC AAGGCATTCG ACCTGTCGAT CCTGTTCCAG
GGTGCTGCGG GAGGTTTGCA ATATGTAGGA CAGACCGAGT CGGGTGACAT TGGTAACTAC
CTGAAATACG CTTACGACAA CCGTTGGACA ATCGACAACC CAAGCTCGAC AGACCCACGC
CTTGCTAACC GTAACAATAC GTATTATACC AACCTCACCA ATGCGGACTC ACCAGGTGCC
AACACCTATT ACCTGAAAAG CAATAATTAC CTGCGTTTGA AAAACATCGA ACTGGGTTAT
AACCTGCCTT CGGAACTGGG CTCGAAAATC GGCGTGAGCA ACCTGCGCGT GTATGTGAAC
GGTTTGAACC TGTTCACGAT CGACAAGATC AAGATCTGGG ACCCGGAAGC AACTTCGACC
AACGGACAAT ACTATCCGCA GTCGCGAGTT CTTAATGCAG GTGTACGTGT AACTTTCTAA
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| Protein sequence | MRISEREKYR SLTRYFYSLL LTLLVMTGAY AQDVTVKGKV NDEQGQGLPG VSILVKGTSA
GTVTDIEGNY TVNAPGTATL VFSFIGYITQ EIPLANKTSL DVKMLADTKA LDEVVVVGYG
TAKKATLTGS VTAVKGAELQ KAPSTNLSNT LGGRLPGVSA VQASGEPGYD GSAIRIRGTN
SLGNSNALIV VDGVPNRSGG LDRLNPADIE SISVLKDAAA AIYGSRAGNG VILITTKRGK
SGKPQLSYDL NLGIAQPTRI PQMSNAAEYA TIRNELQIYD NLPVSQWGGA LQGFNTNGAY
TRTDNGNVLN AVFTPTDLQK FRSGTDPLTH PNTDWYGSVI RNWSPQQRHN LQLTGGSENI
KYLASLGYIN QEGNYVNSAT GYKQYDMRVN LDTKINKYVT ANLGVVLREE FRRFPNGGGA
GDIFRMLMRG KPTEIAIWPD GRPGPDIENG QNPAVITTNT TGYNHDKRDY IQTNGSLDIQ
IPGVEGLKVT AMAAIDKQIR RQKSFQKPWT LYNWDKRSYE ADGVTPVLTG AIRSTFNDPR
LTETSSQELS IQLTGQASYE KTFGSHNFNA MVGIQRETVD ADGFFAFRRY FISPVVDQLF
AGGTPEQNIG NSGTNNGDLF KRARLSYFGR VGYNYKEKYL AEFLWRADGS YVFPKQGRFG
FFPGVSAGWR ISEEDFWKNN IRFVNNVKLR ASWGQMGAEP YLLGTETLAE YQYLNTMGFG
TYILNDQVVK TLLETRVANN QFTWEVANNS NFGIEGTLWK DRIAFEIDYF INNRSNILIP
KTGSTPSTAG IDGKLPPENL GKLQNKGFEF KVSYDGSVDN FTYSVGVNGG YAKNTIKYWN
ETPGVPSYQF TTGRPYQAFL AYQYDGVFRD QAEIDANTID YSGITGTLRP GDMKFKDVSG
DGKITKDDMV RSEKTNRPQF TGGVNINLGY KAFDLSILFQ GAAGGLQYVG QTESGDIGNY
LKYAYDNRWT IDNPSSTDPR LANRNNTYYT NLTNADSPGA NTYYLKSNNY LRLKNIELGY
NLPSELGSKI GVSNLRVYVN GLNLFTIDKI KIWDPEATST NGQYYPQSRV LNAGVRVTF
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