Gene Dfer_0265 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0265 
Symbol 
ID8223831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp299364 
End bp302753 
Gene Length3390 bp 
Protein Length1129 aa 
Translation table11 
GC content53% 
IMG OID644928144 
ProductNon-specific serine/threonine protein kinase 
Protein accessionYP_003084701 
Protein GI255034080 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0553] Superfamily II DNA/RNA helicases, SNF2 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.355266 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.1182 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGC ATGACCCTTC CGGCGTACCG GCACCCGGAC AGCATAATTT TGTCTTCCTC 
GATTTCAACA TTTCCGAGCT GTCGGTTTCG CATATCCTCA ATAACAGCGC AGAAATGCCT
GCAACGGAAA AAAGGGGCTT TTTCGACATC CAACCGCACG AAATCGATGT CGACTACGCC
TCATTCCGCG TGGCCGCCAC GCTCAGCGAG ACATTGAAAG TGGTGGTGAG GCAGGATCAC
CGGGCCGTGA ACCTCTATTG CGAATGCACC CGTCCGAAGC GTAAACTGTG CGAGCACCAA
AGCCAGGTTT TGTATAACCT CCTCAACCGC CGCGACCTGC GCGCATTCTT CGACGAAAAG
CTCCGGCACG AGAAAATCAG AGAGGAGGCT GTATTCTACG GATTGGAGGG TGAAAGCGAC
CTGGATGCAT ATTTTCAGCT TGAATATACG GGCCGGGAGC TGCGCATTAA ACCAAAATTG
AAAGAACTAA TCCCGCTCGA TACGCTTTCG GTGGAGGCAT TGCAGGAACA GCTCGTGGCG
AACCCGCCCC GGGAGTTACC CGGCCCGAAA CCGCAGGCAG CGGACACAAA AACGATCGTG
ACCATCGGCC TCAACAAGTA TTACGACCAT TTCTACATGG AAATGTACGA GGCGCCCGTC
ACGCGGAACG GGAAGCTGAA AAACCCGTTC ACTCCCCTTA ACCCGCTCGA ACAGCTCTGG
AAAACGCAGG ACGCGCAGGA GATCAAATTC CACACCGCGG TGGCGGCATT TCAGAATAAT
TTCCGGAAAA AGAACCCGGA AACCGACCTG CCGGGGCTGT ATGCGATTGT TCAGAACCCG
CTGAAACTGG ATTTTTACTA CCATAACCCG TCGGTTTCGG AGAATATCAA TGCGGCCTCG
CTCCTACCCG TGAAGCTGGC AGCAACTCCG GTCGACCTCC AACTGACGAT TGATAAGAAA
GACCCTTTTC TTCAAATTAA AGGCGAGCTG ATCCTCAACA GCGTGCATCT GGATATCGAA
AGCGTGGAGT TCCGTTATGA TTATTTTGTG TTGTACAAAG ATTCGCTGCA TCTGATCGAA
AGCACGGACA TCCTGCGGGT GCTGCAATTT TTCAGGCAGC ATAACCAGCG CATTTACATT
CACGAGTCAA AATTTGAGGC ATTCAGGGCC AGTGTGCTGG CGAAGCTGGG GAAAAGCATT
CGTATCAATT ATACGTATGT AAAACCGGCC ACGCCCGCGC AGCGCGAAGA GCAGGGGTTT
GACCTGGAAA TCGAGAAAAT CATTTACCTC GAAGATGTCG GCAACTATGT GCTGATCACG
CCCGTGCTGA AATATGGCAA GGTAGAGGTG CCTTTATTCT CAAAAAACGA CATTTATGCC
GTCGATAGCC ACGGTAACCC TTTCATGGTG AAGCGCGACG AGGAAGCTGA GCTGCGTTTC
GGCAGCGCGG TCATGCGCCA GCATCCCGAT TTCGAAGAAC AGCTCGGCAG GGAATTCTTC
TACCTTCACC GCGCGGCATT CCTGAGCGAA GACTGGTTTC CGAATGCATT TGAAGAATGG
CAACACCAGG GCGCGACGAT CCTGGGTTTC AACAAGCTCA CCAAGAATCG CCTCAATCAG
CATAAGGCCA AAATATCGGT GCATGTGGTC AGCGGCATCA ACTGGTTCAG TACCACGGCC
AATGTGGCTT TCGGCAAGCA GAAAGTGACG CTCAAACATT TGCACAAGGC TGTCAAAAAC
CGCAGCAGAT ACGTGGAACT CGGCGACGGC ACACTTGGCA TCCTGCCCGG GGAATGGTTG
GAAAAGTTTG CCAAATTTTT CGATGCGGGT GAGATTGCGG GCGAGGTGAT CCAAACGCCC
AAAATCCGTT TCGCGTCTGT GGAAGAAATG TATGAAGGCG CTATGCTCGA CCGCGACGTG
CAGGAACAGA TCGCATTTTA CCACTCGCGC TTCGGGGATT TCCGGGCCAT CGAGCCGGTA
GCCGTGCCGG GGACATTAAA AGCCACGCTG CGGGATTACC AGAAACAGGG CCTCAACTGG
CTGAATTTCC TCGACGATTT CAATTTCGGA GGCTGCCTGG CCGATGATAT GGGTTTGGGA
AAAACCTTGC AAATCATCGC ATTCCTGCTC CTGCAACGAA AGAAACAGGT ACGGAACACC
AACCTGATTA TCGTGCCCAC TTCCCTGATC TTCAACTGGC AGGCCGAAGT GGAGAAGTTT
GCGCCAAGCA TTAAAATGCT GACCATCTAC GGCGCCGACC GCGTGAAGGA CGTTACCGAT
TTCGATCGAT ACGAGATCGT GCTGACTTCC TACGGCACGT TGCTTTCGGA TGTAAATTTC
CTGAAAAAGT ATCATTTCAA TTACATCATT CTCGACGAAT CTCAGGCCAT TAAAAATCCT
GAATCGCAGC GCTATAAGGC CGTTCGGCTG CTGCAAGCAC GGAACCGGCT GGTCATGACG
GGAACGCCCG TAGAGAATAA TACATTCGAC CTGTACGGAC AGCTGTCATT TGCATGCCCG
GGCTTGCTGG GCTCTAAAAC GCAGTTTCGC AACCATTTCT CGATCCCGAT AGACCGGTTC
AAGGACAGTG AGCGGGCCGC GGAGCTGCAA AAACGGATCA ACCCATTTAT CCTGCGGCGC
ACCAAACAGC AGGTGGCGTC CGAATTGCCG GAAAAAACCG AGATGGTGAT TTACTGTGAA
ATGGGCGAAG AGCAGCGCAA AGTTTATAAT GCGTACGAAC TGGAATTTTA CAATTTCCTG
AACACCCGGA ACCAGGGCGA TATCGAACGC AGCAGGCTGC ACGTTTTGCA GGGACTTACC
AAGCTGCGCC AGATCTGCAA CTCGCCCGCA TTGCTGCGCG ACGATCTGTA CTATGGCGAT
TCGTCGGCTA AAATCGACGT GCTCATGGAA CAGATCGAGG ATACTGCGCC CTGGCATAAG
ATACTGGTAT TCTCGCAGTT TACTTCCATG CTCGACCTCA TCCGCCCCAG GCTGGAAGAG
CGCGGCATCG GCTATGAATA TCTCACGGGC CAAACGCGCG ACCGGGGAGC CCGGGTGGAG
AATTTCCAGA CGAATGCCCA TGTGAGGATC TTCCTCATCA GCCTGAAAGC CGGCGGGACC
GGCCTGAACC TGACCGAAGC GGACTACGTA TACCTCATAG ACCCGTGGTG GAACCCCGCC
GTGGAAAACC AGGCCATTGA CCGCAGCCAC CGGATCGGGC AGCAGAAGAA TGTGATCGCC
GTACGGCTCA TTTGCCCCGG AACGATCGAG GAAAAGGTGA TGGAGTTGCA GGAAACCAAA
AAAGACCTCG CCAATGACCT CGTGAAAACG GACACGGATA TTCTCAAATC ACTCACCCGG
GACGACCTGC TGGCGCTGGT ATCACGCTGA
 
Protein sequence
MKKHDPSGVP APGQHNFVFL DFNISELSVS HILNNSAEMP ATEKRGFFDI QPHEIDVDYA 
SFRVAATLSE TLKVVVRQDH RAVNLYCECT RPKRKLCEHQ SQVLYNLLNR RDLRAFFDEK
LRHEKIREEA VFYGLEGESD LDAYFQLEYT GRELRIKPKL KELIPLDTLS VEALQEQLVA
NPPRELPGPK PQAADTKTIV TIGLNKYYDH FYMEMYEAPV TRNGKLKNPF TPLNPLEQLW
KTQDAQEIKF HTAVAAFQNN FRKKNPETDL PGLYAIVQNP LKLDFYYHNP SVSENINAAS
LLPVKLAATP VDLQLTIDKK DPFLQIKGEL ILNSVHLDIE SVEFRYDYFV LYKDSLHLIE
STDILRVLQF FRQHNQRIYI HESKFEAFRA SVLAKLGKSI RINYTYVKPA TPAQREEQGF
DLEIEKIIYL EDVGNYVLIT PVLKYGKVEV PLFSKNDIYA VDSHGNPFMV KRDEEAELRF
GSAVMRQHPD FEEQLGREFF YLHRAAFLSE DWFPNAFEEW QHQGATILGF NKLTKNRLNQ
HKAKISVHVV SGINWFSTTA NVAFGKQKVT LKHLHKAVKN RSRYVELGDG TLGILPGEWL
EKFAKFFDAG EIAGEVIQTP KIRFASVEEM YEGAMLDRDV QEQIAFYHSR FGDFRAIEPV
AVPGTLKATL RDYQKQGLNW LNFLDDFNFG GCLADDMGLG KTLQIIAFLL LQRKKQVRNT
NLIIVPTSLI FNWQAEVEKF APSIKMLTIY GADRVKDVTD FDRYEIVLTS YGTLLSDVNF
LKKYHFNYII LDESQAIKNP ESQRYKAVRL LQARNRLVMT GTPVENNTFD LYGQLSFACP
GLLGSKTQFR NHFSIPIDRF KDSERAAELQ KRINPFILRR TKQQVASELP EKTEMVIYCE
MGEEQRKVYN AYELEFYNFL NTRNQGDIER SRLHVLQGLT KLRQICNSPA LLRDDLYYGD
SSAKIDVLME QIEDTAPWHK ILVFSQFTSM LDLIRPRLEE RGIGYEYLTG QTRDRGARVE
NFQTNAHVRI FLISLKAGGT GLNLTEADYV YLIDPWWNPA VENQAIDRSH RIGQQKNVIA
VRLICPGTIE EKVMELQETK KDLANDLVKT DTDILKSLTR DDLLALVSR