| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0260 |
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| Symbol | |
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| ID | 8223826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 290615 |
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| End bp | 294478 |
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| Gene Length | 3864 bp |
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| Protein Length | 1287 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644928139 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_003084696 |
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| Protein GI | 255034075 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.579693 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGATC TAAGGAAGGA GCTGTTGAAG CTGCTGCAAA AGGATGAGGC TATTTTTGAC
TTTATCCAGG ATGCGGCGAC AGACGGATTA CTGATTTGGA AGCATTCAGA TCCACAACAA
CATTGGGCCG ACGCAAAATT GCAGCAGGCC CTTGAACCCG GTTTCCGGCC CGGGCCCGCG
GCGCCGTTGC TGGAAAACCG TTCCCTGCTT TTTCATATTG AAAAGTCCCG CGCGCATTTC
CCGCATCATC AGGAACCGCG CACCGGCCTG GTGCGGCTCT TGCGGGGCGA TATGCAGGTA
CTCCGCCTGA ATGTCGCCTC CATTTGTGCG CATTCGGAGG AATGCGGCTG GCTTGTGCTG
ACCGGCTTTC GCCGCGACAG CCTTTCTGAT GAAATTCCAG GGCTGATCAC CAACACGGAA
CTCTACCAAT CATTTCTTAA CAGTAATTCC ATTTACGTAA CGGGCATTGA CCTTGAAGGG
AATTACAAAT ATGTGAACGA CCATTTCTGC GAATTTTTCC GGCTCGACCG GAGCGAGATC
ATTGGCAGGT CGTCCATCAG CGGCGTGGTG CCGGAAGATA TCCCCAAATG TCTCGAAGTA
GGAGAGCAAT GCTTTATCAA TCCCGGCACG CCGAACCCGG TCGTGTTGCG GAAGTACTCG
GCGGGCGAGG GCGTGAAAAC GACGCAATGG GAATTCACGG GCATTGCCGA TGAAAACGGC
GTGGTAACGG AGATTTTCTG TCTGGGTTAC GACATTACCC AGCAGTTGAA AGTGCAGGAG
GATCTTTCGG TGCTGGTTTC CAATATGCAG GACGTACTGT TCACGATCTC GCCGGATGGG
GTTTTTACCT ATGTATCGCC TAGCTGGACA TCCATGTACG GCCACACGGT GGAGGAAACG
GTGGGGCGGT CGTTCACGGA ATTCATTCAT CCCGAAGACT TTCACATCTG TTTCGAGGCA
TTGCGGATTA CTGCTGAAAC GGGCGTACCC GTGCCGGGGG GCGTGGAGCA CCGGATCAGG
CACCGCGACG GCTCGTGGTC GTGGAGCAAC ACAAGCGCCA ACATCGACCC CGTGAGCAAA
AATATCATTC TCACGAGCCA CGACATTACC GAGCTCCGCA ACTCCCGCGA ACGGCTCAAA
GAGCTCGCGA TCGTCGCTTC CAACACGACC GATTATATTG TTATTACCGA CCACAAAGGC
TTCATCACCT GGGTAAATAA GGCCTACGAA ACGCACACGG GTTACAACCG CAAGGAAGTG
GAAGGCAAAA ACCCGCTGCT CCTGCTGCAA GGGCCGGAAA CCGATCACGA AACGCTCGAC
CGGATCTGGG CCGACTGCAA GAATAAAAAG GTGGTGCGCG AAGAAGTGCT GTGCTATACC
AAAAACGGCG AAAAATACTG GGTCGACCTC AAAATCACCC CAGTATTCGA TGATTATGGC
AATTGTTCCA ACTTCATAGC GGTGGAAAGG AACATCACGG CCCGCAAGGA ATCCGATCAG
GAAATGAAGC GGATCAAGGA TATCCTCCAA CAGACCAACA GCGTGGCCGT GGTGGGCGGC
TGGGAGTTGT ATGCGCGCAC GGGAGAACTG TACTGGTCGT CGACAACCCG CGAAATCCAC
GAGGTAGACC CCGACTACGT TCCCAGCACC GAAACCGCCA TTGGTTTTTA CAAAGAAGGC
GCCAGCCGCG AGGCCATCGC ACGGGCGGTC GAAAAAGGGC TTTCATATGG TACACCGTGG
GACAACGAGC TGCAAATCGT GACCGCCAAA GGCAATGAGC GATGGGTGCG CACGATCGGC
AAGGCCGAGA TGGTGGATGG CGTGTGCGTG CGGATTTACG GGGCATTCCA GGACATTACC
CACCGCAAAC AGGCGGAAGT GGAAATTCTG AATTCCGAAG CAAAATTCCG CAGCCTTTAC
GACTCTACGA GCGATGCCGT GATCCTTTTT GACCACACCG GCTATCTCGA CTGCAACGAT
GCCGCCCTGA AAATGTTCGG GATCGACTCG GTGGATATGC TTATGAAAAT GCCGATGGGA
GACTTATCCG GCTTGAACGA GCCGGGCATG GAGGCTGCCA GGAACGACGG CTGCCGGCAT
GTGAGGGAGG TTTATGAAAA TGGCACGCAC AATTTTGAGT GGAAATACAA GCGGTTCGGA
GAATCGAAGG AGTCGTTCAT TGCCGAGGTT CTGTTGAATC TGATGAAAGT GAACGGCAAG
GAGATTATCC AGGCGGTGAT CCGCGACATT ACGATCCGCA AGCGCGCCGA ACTCGAATTG
CTCGAAGCCC GCGAACACGC CGAGGCAGCC AGCAAGCTGA AATCGGAGTT TCTCGCCAAT
ATGAGCCACG AAATCCGCAC GCCGCTGAAC GGCGTGGTCG GTTTCACGGA CCTGCTCATG
AAGACCAACC TCGACGAAAC GCAGCAGCAA TACATGTCGA TGGTTTTCCA GTCGGCCAAC
TCGCTGATGG ACATTATCAA CGACATCCTC GATTTTTCCA AAATAGAAGC CGGCAAGCTC
GAACTCACGC CCGAAAAAAC CGACCTGCTC GAAATCTGCG GCCGCGTTGC CGACATGGTC
ACCTACCAGG CGCAGCAAAA GCACCTGGAA ATGCTCCTGA ACATTCCCGC GGACATTCCC
CGGTTTGTCT GGTGCGATTC CGTGCGGCTG CGGCAAATCC TGGTAAACCT GCTCAGTAAT
GCCGTCAAAT TCACGATCAA GGGCGAAATT GAACTGAAAA TCGAGCTGCT CAACAAGGTA
AGCGGCCTCG ACTACACCTT CCGTTTTTCC GTGCGCGACA CCGGCATCGG CATCGATCCC
CAAAACCAGC GCCGGATTTT CGAAGCATTC TCGCAGGAGG ATTCTTCCAC CACCAAGCGT
TTCGGCGGAA CCGGGCTCGG GCTCACCATT TCGAATAGCC TGCTCGGACT GATGGAAAGC
CGCCTGCAAC TCACCAGCGA GCTGGAAAAA GGCAGCACAT TCTTTTTCGA CGTCACATTC
CGTGCCGTCG AAGGCGAAGA CCGGTTTGAA TGGGATAATG TGGAGGAAAT CGAAAAGATA
CTCATCGTGG ACGATAACGC GCACGCCGGG CAGATCTTGA AAGACATGCT AGGCAACAAA
CGCATTGCCT CCGATTACAT TCCAAGCGGT GAAGAGGCGT ATGCGCTGCT ATCGTCGGGC
AAAAAGTACG ACGTAGTCCT GATAGACGGC CAGATGCCCG GATGGGACGG CATTGAAACG
ACCAGGAAAA TCCGCAAACT GAGCCAGGGC AACAAGCAAC CCATCATTTT GCTCAACGAC
TCCTTCGATG ACGAAGCCCT TACCGCATTT GGCAATGAGT TGAATATCAG GCATTTTTTG
GTAAAACCGG TTAAAATACA GCAGCTCTTT CATGTGCTGG CCGATTTGGG GATCAAAACC
AAAACGCAGG AAGTACAGCC GGAAGCCGCC GCAGACAAAA GTCATTCGAT GGGAATCTAT
GAAAACAGCC ACGTGAAAGT ACTGATCGCC GAAGACCACA AGATTAATAT GCTGCTGGTC
AAATCAATGC TCGCCAAGAT ATTGGTGAAC AGCGAGTTGA TAGAAGCTGC CAATGGCCGG
GAGGCGATCG AGGCATTCAG GGCCAACCGT CCCGACATTG TATTCATGGA CATTCAAATG
CCCGAAATGA ATGGTTATGA GGCCACGCGG GAGATCAGAC GGGCCGAAGG GCGGTCGCGT
GTGCCTATCA TCGCGCTTAC GGCGGGCACC GTCGTGGGCG AGCGCGAGAA ATGCATCGAA
GCCGGGATGG ACGATTACCT GACCAAACCG GTTTTGAAAG ATACGCTGGA AGCATCCATC
CGAAAATGGC TTTATAAGCA GTAA
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| Protein sequence | MNDLRKELLK LLQKDEAIFD FIQDAATDGL LIWKHSDPQQ HWADAKLQQA LEPGFRPGPA
APLLENRSLL FHIEKSRAHF PHHQEPRTGL VRLLRGDMQV LRLNVASICA HSEECGWLVL
TGFRRDSLSD EIPGLITNTE LYQSFLNSNS IYVTGIDLEG NYKYVNDHFC EFFRLDRSEI
IGRSSISGVV PEDIPKCLEV GEQCFINPGT PNPVVLRKYS AGEGVKTTQW EFTGIADENG
VVTEIFCLGY DITQQLKVQE DLSVLVSNMQ DVLFTISPDG VFTYVSPSWT SMYGHTVEET
VGRSFTEFIH PEDFHICFEA LRITAETGVP VPGGVEHRIR HRDGSWSWSN TSANIDPVSK
NIILTSHDIT ELRNSRERLK ELAIVASNTT DYIVITDHKG FITWVNKAYE THTGYNRKEV
EGKNPLLLLQ GPETDHETLD RIWADCKNKK VVREEVLCYT KNGEKYWVDL KITPVFDDYG
NCSNFIAVER NITARKESDQ EMKRIKDILQ QTNSVAVVGG WELYARTGEL YWSSTTREIH
EVDPDYVPST ETAIGFYKEG ASREAIARAV EKGLSYGTPW DNELQIVTAK GNERWVRTIG
KAEMVDGVCV RIYGAFQDIT HRKQAEVEIL NSEAKFRSLY DSTSDAVILF DHTGYLDCND
AALKMFGIDS VDMLMKMPMG DLSGLNEPGM EAARNDGCRH VREVYENGTH NFEWKYKRFG
ESKESFIAEV LLNLMKVNGK EIIQAVIRDI TIRKRAELEL LEAREHAEAA SKLKSEFLAN
MSHEIRTPLN GVVGFTDLLM KTNLDETQQQ YMSMVFQSAN SLMDIINDIL DFSKIEAGKL
ELTPEKTDLL EICGRVADMV TYQAQQKHLE MLLNIPADIP RFVWCDSVRL RQILVNLLSN
AVKFTIKGEI ELKIELLNKV SGLDYTFRFS VRDTGIGIDP QNQRRIFEAF SQEDSSTTKR
FGGTGLGLTI SNSLLGLMES RLQLTSELEK GSTFFFDVTF RAVEGEDRFE WDNVEEIEKI
LIVDDNAHAG QILKDMLGNK RIASDYIPSG EEAYALLSSG KKYDVVLIDG QMPGWDGIET
TRKIRKLSQG NKQPIILLND SFDDEALTAF GNELNIRHFL VKPVKIQQLF HVLADLGIKT
KTQEVQPEAA ADKSHSMGIY ENSHVKVLIA EDHKINMLLV KSMLAKILVN SELIEAANGR
EAIEAFRANR PDIVFMDIQM PEMNGYEATR EIRRAEGRSR VPIIALTAGT VVGEREKCIE
AGMDDYLTKP VLKDTLEASI RKWLYKQ
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