| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0238 |
|---|
| Symbol | |
|---|
| ID | 8223804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 265138 |
|---|
| End bp | 266391 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644928117 |
|---|
| Product | protein of unknown function DUF21 |
|---|
| Protein accession | YP_003084674 |
|---|
| Protein GI | 255034053 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.932515 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAGA TCGCACTGGT ATCCTCCCGG AAATCGCGTC TGGAAGCAGC TGCCAAAAAT
GGCGATTCGA GCGCAAAGGC AGCTTTGAAC CTCGCCAACT CACCTACAAA ATTTCTTTCC
ACGGTACAGA TCGGCATTAC GCTCATCGGT TTGCTGACCG GTATGTACAG TGGCGACAAT
ATCACTGCCG ATTTTGAGCA AATCATTGCC CGTGTGCCCG CGCTGCTGCC TTACTCGCAC
TCGCTGGCGG TGGGCAGCGT GCTGGTGGTG ATCACTTACC TGTCGCTCGT GCTCGGCGAG
CTGGTCCCGA AACGCATCGG AATGGCCAAT CCCGAGGCCA TTTCGAAAGT AATGGCCACG
CCTATGAACC TGCTTTCGAG GGTCACGGCG CCGTTTATCG CATTGCTGGG CTTTTCGAGC
GATCTGATCA TCCGCGTGCT GAATATCAAA CAAAGCGAGA ACGCCGTCAC CGAGGAGGAG
ATCAAAAGCC TGATCCAGGA AGGAACTTCG GGCGGGATCT TCGAGGAAAT CGAGCAGGAA
ATTGTGCATA ATGTGTTCCA GCTCGGCGAC CGTAAGGTTA CATCGCTTAT GACCAACCGG
CAGGAAATTG TGTGGCTGGA CCTGGAAGAT ACCGTCGAAG AAAATAAGGC TAAAATACTG
GACGCGAGGC ATTCTATTTA CCCGGTTTGC CGCGGTAATG TCGATGATGT GGTTGGTTTG
GTGTATGTCA AAGACCTCTT CGCCACCGAC CTGGAAGTGC AAATGGCGAA TCTCACGTCT
ATCATGCGAG ATCCGGTGTA CCTTCCCGAA AGCAACCGGG CTTACCAGGC GCTCGAAAAA
TTCAAGGAGC AGCGGGTTTA TTACGGCATT ATCGTCGACG AATACGGCGG TACGCTCGGT
GTGGTAACGA TGCACGACAT TATGGACGCA TTGGTAGGTG ATATTTCCGA AGACATTGAA
GAGGCGTCCG AAATCGTGCG GCGCGACGAT GGCAGCTACC TCATCGACGC TCAATTGCCT
TTCGACGATT TTATTCAGTA TTTCAATATC AATATCCAGG ATAGTGAACG CCGGGAACTG
GTGGGCTTCA ATACGCTCGG TGGTTTTGTG CTGCACGTCC TGGAAAACAT TCCGCAAACG
GGCGAGAAGT TCAGCTGGAA ACAGTTCGAG TTCGAGGTGA TCGATATGGA TCGCAGCCGG
ATAGACAAGC TTTTAGTAAC CAATTATAAT AAACAGGAAG AATCCGAAGA TTAA
|
|---|
| Protein sequence | MSEIALVSSR KSRLEAAAKN GDSSAKAALN LANSPTKFLS TVQIGITLIG LLTGMYSGDN
ITADFEQIIA RVPALLPYSH SLAVGSVLVV ITYLSLVLGE LVPKRIGMAN PEAISKVMAT
PMNLLSRVTA PFIALLGFSS DLIIRVLNIK QSENAVTEEE IKSLIQEGTS GGIFEEIEQE
IVHNVFQLGD RKVTSLMTNR QEIVWLDLED TVEENKAKIL DARHSIYPVC RGNVDDVVGL
VYVKDLFATD LEVQMANLTS IMRDPVYLPE SNRAYQALEK FKEQRVYYGI IVDEYGGTLG
VVTMHDIMDA LVGDISEDIE EASEIVRRDD GSYLIDAQLP FDDFIQYFNI NIQDSERREL
VGFNTLGGFV LHVLENIPQT GEKFSWKQFE FEVIDMDRSR IDKLLVTNYN KQEESED
|
|---|
| |