Gene Dfer_0152 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0152 
Symbol 
ID8223718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp171074 
End bp174415 
Gene Length3342 bp 
Protein Length1113 aa 
Translation table11 
GC content52% 
IMG OID644928031 
Producttrehalose synthase 
Protein accessionYP_003084588 
Protein GI255033967 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID[TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.38856 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATACA GGAAAGGAAT GCCCGACAAA AATTTGCATT GGTACAAGGA TGCAATCATT 
TACGAACTTC ATATCAAAGC CTTCAAAGAC GGAAATTGCG ATGGGATAGG CGATTTCAAG
GGACTACTGG AACAGCTGGA TTATCTGCAA GACCTGGGCG TAACGGCCAT CTGGCTGCTG
CCCTTCTACC CTTCCCCGCT GCGCGACGAC GGCTACGACA TTGCTGATTA TTACACGATT
AACCCGTCGT ACGGCGACAT TCAGGAATTC AAAACGTTTC TGCGCGAAGC GCATAAGCGC
GGCCTGAAAG TGATTACCGA ACTGGTGATC AACCACACTT CCGACCAGCA CCCATGGTTC
CAGCGTGCGC GCCGCGCGCC CAAGGGCTCG GCGTATCGGA ATTTTTATGT GTGGACGGAT
GATCCGCATC AGTTCAAAGA CGCCCGCATT ATTTTCCAGG ACTATGAAAA ATCGAACTGG
ACGTGGGACA ACGAGGCCGA GCAATACTAC TGGCACCGGT TCTTCCACCA CCAGCCCGAT
TTGAACTACG ACAGTATGGA TGTACAGGAA GAGATCTTCA AAATCATCAA TTTCTGGTGT
AAAATGGGTG TCGATGGGTT CAGGTTGGAT GCTGTGCCTT ACCTTTTCGA GCGCGACGGG
ACCAACTGCG AGAATCTGCC CGAAACGCAT GCATTCCTGA AAAAACTGAG AAAGTACGTC
GATGACCGCT ATCCCGGCAC ATTGCTTCTG GCAGAGGCCA ACATGTGGCC CGAGGACTCC
GCGGCGTATT TCGGGGACGG CGACGAATGC CAGATGAATT ACCATTTCCC GATCATGCCG
CGGATGTTTA TGTCGCTGCA AATGGAGGAC CGCTATCCGC TTACCGACAT TTTCGACCAG
ACGCCCGCCA TACCGGACAA CTGCCAGTGG GGTATTTTCC TTCGGAACCA CGATGAGCTG
ACGCTTGAAA TGGTTACTGA CGAGGAGCGC GACTATATGT ATAAGACGTA TGTCAAAGAT
CCGAAGGCGC GCATTAACCT CGGGATCAGG CACCGCCTGG CGCCGCTGAT GGAGAACAAC
CGTAAAAAAA TCGAGTTGCT GAACTCCCTG CTCTTCACAT TCCCCGGTAC ACCGATCATT
TATTACGGCG ATGAAATCGG GATGGGCGAT AATTTTTACC TCGGCGACCG CGACGGCGTG
CGCACCCCCA TGCAATGGAG CCCCGACCGG AACGCCGGGT TTTCGCAAGC CAACCCGCAA
CGCCTGTACC TGCCGCTGAT CCTCGATCCG CAGTACCATT ACGAGTCTGT GAATGTGGAA
TTGCAGTCGC GCAATTCCTC GTCGCTGCTG TGGTGGATGC GCCGGGCGAT CAGCACGCGC
AAAAAATACA AGGCATTCAG CCGCGGCGAC ATTAAGTTTT TAAACCATGA AAACGCGAAG
GTGCTTGCAT TTACGCGCAG CTTTGAGGAC GAAACGATGC TGGTCATCGC CAATTTGTCG
AGGTTCCCGC AACCTGTGGA GCTCGATCTG GATCAATATA AAGGGTTTCA GCCGGTGGAA
ATTTATAGTA AAAACAAATT CCCGTCGGTG AAGGACAACA CACCCTACTT TTTCACATTG
GAAGCGTACG GCTGCCAATG CTTCCTGATG CAGAAAACGC ATCCCGAGAT CGACGACAAC
CGTGAGCTAC CATTGGTGAA ACTCGATAAA TGGAAAGATC TTTTGGAACC GAATATGCTG
GAAAAACTGG AAACGCAAAT TCTTCCGGCC TATCTGATGA AAATGAGATG GTTCGGAGGA
AAAGGCAAAG GCCTCGACAA AGTGAGCATC GTTTCCCACG CCAGCATTCC ATTGGGCGAT
AACCCGCCGT GCTTCCTGCT TTTGATCGAA ACAACTTACC AAAACGACCT GCCGGAAATG
TACCAGCTGC CGGTGGCATT CGGCAAGGAG CCGTTCGCAT TCAACGTCCG CGAAAACTGC
CCGCAGGCCG TGCTGGCGCG CATTCAGATC AAGGGTGAAG AGGAAGGGGT ATTGTTTGAT
GCGATTTACG GACTTGAATT GCAACAGGCG CTCATTCAGA ACATGGCAGC CAACGAACGG
TTGAATGCTA AAAACAGCCA GATTCATTTT ACGGGCAACC GGGAACTGGC GCAGCATATC
AAGGAAACTG ACCGCATCAA ACCGCGTGTG CTTTCAGGAG AGCAGAGCAA TACTTCCATT
ACTTATGATG GAAAGTATTT CTTCAAACTC TATCGCAAAG TCGACCGGGC CATTAACCCC
GACGTCGAGA TCACGCAATA CCTTACCAAT AAGGCCCGCT TCAAAAACAT CCCGGCTTAC
ATCGGCGCCA TTGAATGGAA GTACAAAAAG GATTCAATGG TGCTGGGCAT GATGCAGGAA
ATGGTGAGCA ATGCCACCGA CGCCTGGGCC AACATGCTCG ACAGACTGGA TAGCTTCAAC
GAAAAAGTGC TGTCCACAAC AGACCTCGAG CTGCCTACCG AGCTGGTCGG AACGCTCACC
GATCCTGTGG GTTATGAAGA CATTCCAGAC ATTATGAAGG AATTGCTGGA TGTGCATGTG
GCTGAACAAG CGAGGCTGCT GGGTGAGCGT ACGGCGCAAA TGCACCTGGC CCTCGCAGGA
GAAAAAGAAA ACCCGGATTT CAAACCGGAG GAGTTTTCGT TGCATTACCA GCGGTCGGTG
TACTCATCGC TGCAATCCCT GGTCCGTGCC ACATTCCAAA GCCTCAACCG AAACATGAAG
AAACTGACGC CGGAAATGCG CCAGGCGGCC GAGGAAACCA TGCAGTTGCG GGATGAAATA
CTAACCGAGC TCAAAAAAGT ATACAGCCAC AAAATCGATA CGGCCAAAAT CCGTATCCAT
GGCGACTACC ACCTGGGCCA GGTGCTGTTT ACCGGAAAAG ACTTCGTCCT GCTCGATTTC
GAAGGAGAAC CCGCCCGCAG TTACAGCGAG CGGCGATTGA AACGCTCGGC GCTACGCGAC
GTGGCAGGTA TGCTGCGGTC GTTCCACTAT GCGGCTCACA GCAGCCTTTA CCTGGATAAC
CAGATCAGGC CGGAAGACGC GGGCAAATTG CTGCCGTTTG TGGAACAATG GTATCACTAT
ATGAGCGGCT TTTTCCTGAA AGCATACCTG GAAACGGTGG GCAATGGCGC GATCATCCCG
CACCAGAAAG GCGATCTCGA AATACTTTTG AGGACATTCC TGCTGCAAAA GGCGATTTAC
GAGCTCAATT ACGAAGTAAA CAACAGACCA TCCTGGGTAA TGGTGCCTTT GAGGGGCATC
CGGGCCATTC TGGACAAATC GGAGGCGGCT GTGGTGGCTT AA
 
Protein sequence
MEYRKGMPDK NLHWYKDAII YELHIKAFKD GNCDGIGDFK GLLEQLDYLQ DLGVTAIWLL 
PFYPSPLRDD GYDIADYYTI NPSYGDIQEF KTFLREAHKR GLKVITELVI NHTSDQHPWF
QRARRAPKGS AYRNFYVWTD DPHQFKDARI IFQDYEKSNW TWDNEAEQYY WHRFFHHQPD
LNYDSMDVQE EIFKIINFWC KMGVDGFRLD AVPYLFERDG TNCENLPETH AFLKKLRKYV
DDRYPGTLLL AEANMWPEDS AAYFGDGDEC QMNYHFPIMP RMFMSLQMED RYPLTDIFDQ
TPAIPDNCQW GIFLRNHDEL TLEMVTDEER DYMYKTYVKD PKARINLGIR HRLAPLMENN
RKKIELLNSL LFTFPGTPII YYGDEIGMGD NFYLGDRDGV RTPMQWSPDR NAGFSQANPQ
RLYLPLILDP QYHYESVNVE LQSRNSSSLL WWMRRAISTR KKYKAFSRGD IKFLNHENAK
VLAFTRSFED ETMLVIANLS RFPQPVELDL DQYKGFQPVE IYSKNKFPSV KDNTPYFFTL
EAYGCQCFLM QKTHPEIDDN RELPLVKLDK WKDLLEPNML EKLETQILPA YLMKMRWFGG
KGKGLDKVSI VSHASIPLGD NPPCFLLLIE TTYQNDLPEM YQLPVAFGKE PFAFNVRENC
PQAVLARIQI KGEEEGVLFD AIYGLELQQA LIQNMAANER LNAKNSQIHF TGNRELAQHI
KETDRIKPRV LSGEQSNTSI TYDGKYFFKL YRKVDRAINP DVEITQYLTN KARFKNIPAY
IGAIEWKYKK DSMVLGMMQE MVSNATDAWA NMLDRLDSFN EKVLSTTDLE LPTELVGTLT
DPVGYEDIPD IMKELLDVHV AEQARLLGER TAQMHLALAG EKENPDFKPE EFSLHYQRSV
YSSLQSLVRA TFQSLNRNMK KLTPEMRQAA EETMQLRDEI LTELKKVYSH KIDTAKIRIH
GDYHLGQVLF TGKDFVLLDF EGEPARSYSE RRLKRSALRD VAGMLRSFHY AAHSSLYLDN
QIRPEDAGKL LPFVEQWYHY MSGFFLKAYL ETVGNGAIIP HQKGDLEILL RTFLLQKAIY
ELNYEVNNRP SWVMVPLRGI RAILDKSEAA VVA