Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_0076 |
Symbol | |
ID | 8223642 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 93139 |
End bp | 93825 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644927955 |
Product | pseudouridine synthase |
Protein accession | YP_003084512 |
Protein GI | 255033891 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.694832 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.499098 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACCCC TGGAAATCCT GTACCGGAGC GACGACCTTG TCGCCATTAA CAAACCCAAT GGCCTGCTCG TACACCGTTC GCCCATTGCC AGCGATGCGG ACGTCTTCGC GGTGCAGCTC CTGCGCGATC AGCTGAGCCA GAAGGTATAC CCGGCCCACC GCCTCGACCG GAAAACTTCC GGCGTACTGC TCTTCGCCCT CAACGAAAAC GTGAACAGCG AAATGCAGGG GAAATTCATG GAAGGCGAAA TCACCAAAAC CTACCACGCG ATCGTCCGCG GGCACACAGC CGACCGCGGC GAGATCGATT ATCCATTAAA ACGCGACGAC GGCGTAACGC AGGATGCCGT AACCCATTTC GAAACGCTGG CACGCGCCGA AGTACCCTTT GCCCTCGGTA AGCACGCCAC CTCGCGTTAC TCCCTCGTGC AGCTCAACCC ATTAACCGGC CGGATGCACC AGCTGCGCAA GCACATGGCC CACATCATGC ACCCCATCAT CGGCGACCGC CCGCACGGGT GCAACAAGCA GAACCGGTTT TTTAAGGAGG AGCTCGGGAT GATTCAGATG ATGCTGCATG CGGTGTCGGT GGAATTTGTG CATCCTGTTA GTGGTCAGCA TGTGACTATT GTGGCGCCTT ATTTGTCTGA ATTTGTGAGG ATGAGAAGTG TGCTTGGTTT GGAGTAA
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Protein sequence | MQPLEILYRS DDLVAINKPN GLLVHRSPIA SDADVFAVQL LRDQLSQKVY PAHRLDRKTS GVLLFALNEN VNSEMQGKFM EGEITKTYHA IVRGHTADRG EIDYPLKRDD GVTQDAVTHF ETLARAEVPF ALGKHATSRY SLVQLNPLTG RMHQLRKHMA HIMHPIIGDR PHGCNKQNRF FKEELGMIQM MLHAVSVEFV HPVSGQHVTI VAPYLSEFVR MRSVLGLE
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