Gene Dfer_0065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0065 
Symbol 
ID8223631 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp79753 
End bp82140 
Gene Length2388 bp 
Protein Length795 aa 
Translation table11 
GC content45% 
IMG OID644927944 
Productcapsular exopolysaccharide family 
Protein accessionYP_003084501 
Protein GI255033880 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG0489] ATPases involved in chromosome partitioning 
TIGRFAM ID[TIGR01007] capsular exopolysaccharide family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.121556 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGATT TAACAACTAA CGAGGGTATG AACCCAATGT TCCAGGAGGA AGAACAAGAG 
TTCAACCTGA ACGAATACCT TAGAAGATAC TACCGCTACT GGTATCTTTT CCCCGTATTT
ATCTGCATCG CTTTCATCGC AGCGTTCTTT TATCTGCAGA CTACATCACC TGTATATAAT
ACCAAAACCA GTATTTTGAT CAAGGATGAG AAAAAAGGTC TGAGCGGATC GCAGGGCGAT
ATCCTTTCCG AACTGAGCAC TCAGTTCGGA GGCAACAAGC TTGTTGAAAA TGAATTAGAG
ATTATAAAAT CTAAAACACT AATGGAGCAG GTCATCAAGG AGCTCTCGTT AGACGTTTCA
TATTCAACGC GCGATGGACT GAGAACCGTT TCTCTTTATA AACGGAGCCC GGTAGTTGTT
AAGCCTGAAG TAATAACTGA GTTCGCGCTG AAAGAACCTT TGGTTGTACA TGTTGTTGAT
GAAAATCACT TCAGATTTAA TAATGAGGAG AAAGTGTTCA GTTTCAATCA AAGGTTCGCG
AATGCTTGGG GAGCTTTTGT TGTGTTGAAG GGGCCAAAGT CCACCTACGA CAAAGTTACT
GTGACTTTCA AAGACACTAA GAACCTGACA GAAGGCATGC TGAGCCGATT GACCGTAGAA
CAGCCGAACA CGAAAAGCAC TGTGCTTGAA ATCAGCTATG AAGACGTCGA TACGCAGCGT
TCGAAAGATG TATTAAATAA GCTTCTGGAT GTTTATGTAC AATCATCACT TGGAGACAAA
AACAGCGAAG CAAGCAATAC GCTTAAATTT ATAGAAAACA GGTTGGGCCT TATCACGGGC
GAGCTTGGAG ATGTTGAAAA GGATGTCGAG TCGTATAAGA GAACGCAGGG GATTACTGAC
ATTGGTACAG AATCCAAGCT TTTCCTGGAA AATATTAAAG AAAACGACTC GAAACTTAAT
GAGGTGAATA CTCAGATAAG CATTTTGGAG AGCGTCGAGA ACTACATACA GAACGCCGGG
GAAGGTGCTG TTGCGCCGGC GACTTATATG ATCAATGATC CCGTCCTGGT ATCGTTGTTG
ACCAAATTTA ATGATCTGGA GTTGCAGCGC GAGCGATATG CGCGTACTAC TTCTCCCAAC
AACCCGCTAT TGCAAACTAT TAACACCCAG CTAGCGGGTA CTCGCCAGTC AATCAGAGAA
AACGTACAAA ACCTGAAAAG GGGGATGGCG GTAACCAAGC GCAATCTGGA AGGTATCAAT
ACAAGATTTT CCGCCGGCTT GCAAAGCATC CCCAAAAAAG AACGCGAATT TGTCGGCATC
AAGAGACAAC AGTCTATCAA AGAAGAGCTG TACCTGTACT TGCTTCAGAA GCGCGAAGAA
ACTGCATTGG CCTATGCTTC TACCGTAACA GATAGCCGCC TAATCGATGC TCCTATTTCC
AGCTTTAATC CGATTAAGCC TAAGCCATCG CTTGTATGGC TAGGTTCGGC ACTGGTAGGA
ATTTTACTTC CAGTATTGCT AATCAATTTC CTCTTTATGA TTAACAATAC CATACAGTCT
CGAGAAGAGA TCGAAAAGGT CACTCATTCT TCAATCCTGG GTGAGATCGG GCAGATGAAG
GGTACTGTAA ACGGTGTTCC AGGTGAAGAG TCGATTATAA AAATGACCAG CCGCAGCGCT
GTGGCTGAAC AATTCAGAGC TCTTAGAACC AACTTGCAAT ATCTTGGAGA TGGCACGTGT
AGGGTGATTA TGTTTACATC TTCGATTGGT GGGGAAGGAA AAAGTTTCGT AAGTATTAAC
CTGGCAGCCA GTCTCGCTTA CTCGGATAAA CGCGTACTGC TCATAGGCCT CGATTTGCGG
AAACCTACGC TACATGAGCG TTTGGGTGTG CCTAACCGTT TCGGTGCCTC AAACAGCCTC
ATCGGCCAGG GTAACTACGA GGATTTCATT CAGTCGACAG GCGTGCATCC GAAGTTTGAT
GTACTCACAA GTGGTCCTAT TCCTCCCAAC CCATCAGAGT TGTTGAGTAA TGGAAAGCTA
CCTGTACTGC TCGAAGAACT ACGGCATAAA TATGACTATA TCCTGATTGA TTCGCCTCCG
TACGGATTGG TTACAGATTC GGCCTTGATC GCTGAGCATG TTGACGCGAC ACTCTATCTG
GTTCGTTTTA ACTACACCAT CCATGACCAT CTTAAACGCA TCGGAGACTT GCAACGGGCT
CGTCGCTTTA ACAACCTTTC CGTCATCTTC AATGGTGTGA ACTACGGTGC CGGATATGGT
TACGGATACG GTTATGGGGG ATATGGTTAC GGCTACTATT CGGAAGAACT GGAAGGAGGT
TCGAAATCTG TCGGTTCCCG TCTGAAAAAG CTGGTAGGCA AAGTTTAA
 
Protein sequence
MKDLTTNEGM NPMFQEEEQE FNLNEYLRRY YRYWYLFPVF ICIAFIAAFF YLQTTSPVYN 
TKTSILIKDE KKGLSGSQGD ILSELSTQFG GNKLVENELE IIKSKTLMEQ VIKELSLDVS
YSTRDGLRTV SLYKRSPVVV KPEVITEFAL KEPLVVHVVD ENHFRFNNEE KVFSFNQRFA
NAWGAFVVLK GPKSTYDKVT VTFKDTKNLT EGMLSRLTVE QPNTKSTVLE ISYEDVDTQR
SKDVLNKLLD VYVQSSLGDK NSEASNTLKF IENRLGLITG ELGDVEKDVE SYKRTQGITD
IGTESKLFLE NIKENDSKLN EVNTQISILE SVENYIQNAG EGAVAPATYM INDPVLVSLL
TKFNDLELQR ERYARTTSPN NPLLQTINTQ LAGTRQSIRE NVQNLKRGMA VTKRNLEGIN
TRFSAGLQSI PKKEREFVGI KRQQSIKEEL YLYLLQKREE TALAYASTVT DSRLIDAPIS
SFNPIKPKPS LVWLGSALVG ILLPVLLINF LFMINNTIQS REEIEKVTHS SILGEIGQMK
GTVNGVPGEE SIIKMTSRSA VAEQFRALRT NLQYLGDGTC RVIMFTSSIG GEGKSFVSIN
LAASLAYSDK RVLLIGLDLR KPTLHERLGV PNRFGASNSL IGQGNYEDFI QSTGVHPKFD
VLTSGPIPPN PSELLSNGKL PVLLEELRHK YDYILIDSPP YGLVTDSALI AEHVDATLYL
VRFNYTIHDH LKRIGDLQRA RRFNNLSVIF NGVNYGAGYG YGYGYGGYGY GYYSEELEGG
SKSVGSRLKK LVGKV