| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0040 |
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| Symbol | |
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| ID | 8223606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 42740 |
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| End bp | 45907 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644927920 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_003084477 |
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| Protein GI | 255033856 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.513333 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.265897 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGCAG ATGTTTTTAT AAAAAGGCCG GTCACCGCGA TAGTATCCTC GGTGGTGCTG
GTCCTGGTGG GGCTCATTGC CCTTACCACC CTGCCGGTGG CCCAATATCC CGATGTTACC
CCTCCTACCG TAACCGTTAG CGGGAACTTC ACGGGAGCCG ACGCGCAGAC GGTCGAGCAG
ACGACCACAA CCCCCATTGA AACGCAGATC AACGGTGTGC CCGGCATGAC CTACATGTCG
AGTAACAGTA CCAGCAGCGG CCAGAGCAGC ATTAACGTCG TGTTCGACGT GGGTACGGAC
GTGAACATTG CGGCTCTCGA CGTGCAAAAC CGCGTGAGCG TGGCAGAGCC TACCTTGCCC
GATGCGGTGA AGCGCCTCGG TCTGACCGTC CGCAAACGTC AGCCGAGCAT CATGATCGCC
CTGGCATTGT ATTCGCCGAA CGGCACGCAC GACGCGCAAT TTATCGGTAA CTATGCCAAC
ATTTACCTGA AAGACGCACT CCAACGCGTA AAAGGTGTAG GTGACATTGT ATCCCGCGCC
GACGACTTCG GTATGCGGAT CTGGCTGAAC CCCGAGAAAC TGGCCAACCT CCGCATGACG
CCATCGGACA TCTCCGCGGC ATTGGCGGAG CAGAACTTGC AGATTGCGGC CGGTACCGTC
GGCGGCACGC CTCAGCCCGG CGCGCAGGCA TTTGAATACA GCGTACTCAC CAACAGCCGC
CTGAATACCA AGGAGCAGTT CGAAAACATC ATCGTACGAT CCGCTCCCGA GGAAGGAAGT
GTGGTGTACC TGCGCGACGT GGCGCGCGTG GAACTGGGTA AGTTCGACTA CGGCGTGAAT
GCATTCGTGG CGGGAAAACC AGCTGCATTC GTGCTCATTT ACCAGGCGCC CGACGCCAAT
GCGCTCGATA CCTACGAAGG GGTAATGAAG GCGCTGACGG AAATGAAGAA AACTTTCCCG
AAAGACATCG ACTATGTGAT CCCGGTTGAA ACAGCTTCGG TCGTGAAAGT GTCCATCGAG
GAAGTATTGC ACACATTCGG TGAGGCGATG ATCCTCGTGG TGCTCGTGGT GTTTTTGTTC
CTCCAAAACT GGCGGGCAAC CCTGATCCCC ATCCTGGCGA TCCCGGTTTC CCTGATCGGT
ACATTTATAT TCTTTATTCC ATTCGGTTTT ACGATCAACA CGCTCACGCT CTTTGCGTTC
GTACTCGCGA TCGGTATCGT GGTGGATGAT GCGATTGTGG TGGTGGAAGC GGTGCAGCAT
TATATTGATG AAAAGAAAAT GTCGCCGCGC GCCGCTACTG AGCAGGCCAT GAAAGACATT
TCGGGCCCGG TAATCGCGAT TGCGCTCATC CTCGCGGCGG TGTTTGTGCC GGTAGGTTTT
GTACCGGGTA TCGTGGGGCG CCTTTACCAA CAGTTTGCGA TCACGATCGC CGTTTCGGTA
TTGCTTTCGG CATTTGTGGC CCTTTCACTT ACACCGGCGC TTTGCTCGAT CATGCTGCGT
CCTTCCAAAG GTGAGAATGA TAAAAAGAAT GCATTGGAAA AATTCTTCGA CCGCTTCAAC
CGCTGGTTCG ATAAAGTTTC ACGCTCCTAC ACGCGGGGTG TTTCCAAATG GATCAAAGCG
ACTCCGCTGG TACTTGTGAT GATGGTCTGC TTGTTCGTGG GATTGTTCTT CCTGTTCAAA
AACAAACCCT CCGGTTTTAT TCCGGTCGAA GATGAGGGAC GTCTGTTCGT AACCTACGAA
ATGCAGGAAG CAACCTCAAC CACCCGCAAC GTGGCGATGA TTAAGGACAT TATGGGCCGC
GTATCCGCTA TTCCCGAAGT GAAAGTGGTC GGTGGTTTGG CGGGATTGAA CGTGATCAGC
TTCTCGAACA AATCCAACGT GGGTACGATG TTTGTGAGCT TACATCCGTG GGCGGACCGG
AAAGGTGCCG AACACCACGT GCAGGCGGTG ATCAAGGAAA TCCAGAAACG CACGGCCGAC
ATCAAGGAAG CGCGCGTGCT CGCCATTGCC CCTCCTGCCA TTCCAGGCTT GGGTGCAACG
TCCGGTTTCA CATTCCAGTT ACAGCAATCG ACCAGTACCG ACAACATCCA GCAATTCGAA
GCAGTTGCCC GCGAATTCCT CGGAAGGGTA AACAAACGCC CCGAAATTGC GATGGCTTAT
ACCTTCTTTA ATGCAAGGAC GCCAAGTTAC CAGATCGACG TGGACCGCGA CAAGACCAAG
AAGCTGGGCG TGCAGGTGAA TGATGTATTC AATTCATTGT CAACGCTTCT GGGTAGCAGT
TATGTAAACG ACTTTAACCT CTACGGCCGT AACTTCCGCG TGATGGTGCA GGCCGACAGC
AGCTTCCGCT CGTCGCTCGA CAAGATCCAG AAATTCTACG TCCGCAACAA GGCCGGTAAC
ATGGTGCCGC TCAGCGCATT GGTGACTTCG CGCGTGGTGG AAAACCCGGC ATTGATTTCC
CACTACAATA TTTACCGTTC GGTGGAAATC AACGGTACGC CGAAACCCGG TTACAGTAGC
GGCCAGGCCA TCACCGCATT GCGTGAAGAG GCGGCCAAAC TGCCTGCCGG TTATAGTTAC
GAGTTCTCCG GGATGAGTAG CGAGGAAATT AAAGCGGGCG ATAGCACAGT CACCATTTTC
GCGATCTCGA TCGTGTTTGT GTTCCTCTTT CTCGCAGCGC TTTATGAAAG CTGGTCGATC
CCGTTCTCCG TACTTTTCGC GGTACCTATC GGGGCATTCG GCTCGATCCT TACATTGACA
TTCCTGCCGG ATTTGTCGAA CAACATTTAT GCGCAGATCG GTTTGATCAC GCTCATCGGT
CTTGCGGCGA AAAATGCGAT CCTGATCGTG GAGTTTGCCA AAGAGCGGGT CGATAATGGC
ATGGAGCTCG TGAAAGCAAC GCTCGAAGCC GTGCAGCTGC GCTTGCGGCC GATTATCATG
ACGTCGCTGG CGTTCATTCT CGGCGTACTT CCGCTCGCAT TCGCAAGCGG GGCCGCGGCC
GAATCGCGTA AAACCATCGG CTGGACGGTG TTCGGAGGAA TGATCGCCGC AACTTCCCTG
GCGATCTTCG TAGTACCGGT GCTGTTTGTG GCCATTGAGA AGCTCGTGAC CAAAAAGGGT
AACCAACCTG CCAAACCGGG CAATGCAGCC GACGCAACGG CGCATTAA
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| Protein sequence | MIADVFIKRP VTAIVSSVVL VLVGLIALTT LPVAQYPDVT PPTVTVSGNF TGADAQTVEQ
TTTTPIETQI NGVPGMTYMS SNSTSSGQSS INVVFDVGTD VNIAALDVQN RVSVAEPTLP
DAVKRLGLTV RKRQPSIMIA LALYSPNGTH DAQFIGNYAN IYLKDALQRV KGVGDIVSRA
DDFGMRIWLN PEKLANLRMT PSDISAALAE QNLQIAAGTV GGTPQPGAQA FEYSVLTNSR
LNTKEQFENI IVRSAPEEGS VVYLRDVARV ELGKFDYGVN AFVAGKPAAF VLIYQAPDAN
ALDTYEGVMK ALTEMKKTFP KDIDYVIPVE TASVVKVSIE EVLHTFGEAM ILVVLVVFLF
LQNWRATLIP ILAIPVSLIG TFIFFIPFGF TINTLTLFAF VLAIGIVVDD AIVVVEAVQH
YIDEKKMSPR AATEQAMKDI SGPVIAIALI LAAVFVPVGF VPGIVGRLYQ QFAITIAVSV
LLSAFVALSL TPALCSIMLR PSKGENDKKN ALEKFFDRFN RWFDKVSRSY TRGVSKWIKA
TPLVLVMMVC LFVGLFFLFK NKPSGFIPVE DEGRLFVTYE MQEATSTTRN VAMIKDIMGR
VSAIPEVKVV GGLAGLNVIS FSNKSNVGTM FVSLHPWADR KGAEHHVQAV IKEIQKRTAD
IKEARVLAIA PPAIPGLGAT SGFTFQLQQS TSTDNIQQFE AVAREFLGRV NKRPEIAMAY
TFFNARTPSY QIDVDRDKTK KLGVQVNDVF NSLSTLLGSS YVNDFNLYGR NFRVMVQADS
SFRSSLDKIQ KFYVRNKAGN MVPLSALVTS RVVENPALIS HYNIYRSVEI NGTPKPGYSS
GQAITALREE AAKLPAGYSY EFSGMSSEEI KAGDSTVTIF AISIVFVFLF LAALYESWSI
PFSVLFAVPI GAFGSILTLT FLPDLSNNIY AQIGLITLIG LAAKNAILIV EFAKERVDNG
MELVKATLEA VQLRLRPIIM TSLAFILGVL PLAFASGAAA ESRKTIGWTV FGGMIAATSL
AIFVVPVLFV AIEKLVTKKG NQPAKPGNAA DATAH
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