Gene Dfer_0032 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0032 
SymbolinfB 
ID8223598 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp32233 
End bp35283 
Gene Length3051 bp 
Protein Length1016 aa 
Translation table11 
GC content54% 
IMG OID644927912 
Producttranslation initiation factor IF-2 
Protein accessionYP_003084469 
Protein GI255033848 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0532] Translation initiation factor 2 (IF-2; GTPase) 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00487] translation initiation factor IF-2 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.247962 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGAAG ATAAAATGAT GCGCCTTAGC CAAGTGGCAC GGATCCTCAA CGTGGGTATT 
ACTACGATCG TGGATCATCT GTCTGCCAAG GGGTATAAGG TGGAAAGTAA CCCGAATACC
AAAATTAATG CCGATCAAAT TGAGTTTCTT GCGAAGGACT TCAAATCGAA TGAGCTGAGG
TCGTCCCTGA CGCAAAAACC GGCCGCTCCT GCTGTGGAAG CGCCTGTTGA AGTGAAGGAC
GACAAGGTAA AAAGCGATGT AGAGGGAATT CTCTATTTTA GAAATACACC AAAAGCCGAG
GAAAAGCCAG TGGTGGAAGA AAAGCCAGCC GCTTCGGAGC CTGCTTTTGA AAATAAACTT
CCCGGTATCA AGGTAGTCGG CAAGATCGAC CTCGACGCAA AACGGCCGGC AGTACAGCCA
CCTGCGGCGC CGGAGGAACG CCCTGCACCG GAAGCACCGA AGGAAGTGGT CGCTGAAAGC
CCGAAAGCAG CGCCTGCGCC GGTAGCGAAA GAAGAACCGA AACCGGTAGC CGCTCAGCCA
GAGCCTGTGA AGGAAACTCC GGTGGAAGCC CCTGCGAAAG AAACGCCTGC GGCCCCCGCA
GCGCCGGCCG CAGAAGCTCC CGCGAAGGAA GAACCACGCC CGGCTGCCCC TGCCGAAAGC
AAGCCGGAAC CAGTTGAGCC GAAGGAAACG GCGCCAGTTG CCGCTAAACC TGAGCCCGTT
GCGCCGCAGC CGGCCGCTAC ACCTGAGGAA CCAAGCGGCG AATCGCAGCT GATCGAAGCG
CGCGGTGAGC AGCTCAGAGG CTTGAGGGTG GTAGGAAAAA TCGAGCTGCC TTCCGATAAA
AATAAAAAGA AAGATCCTGT TGCATCCAGC GATGCGTCAG CCGATAAAAA ACGTCGCAGA
AAGAGAAAGA GAATCCGCGA TGGTGCTGCC GCCCCCGGCG AAAACCGTCC GGCAGAAGGC
GCTGCGGCTG CAAATGCCAA CGCAGGCACC ACCAATACAG GTACCGATGC AAACCGGAAC
CGCCCTAATA CGCCTGGAAC AACGCAAGGT GGTAACCAGC AGGGTGGACA GCAACGGCCC
GGCCAGGGCG GAGGCAACCG CAGCGGTAAT GCCGGCGGCA ACAACCGCAG AGGCAACCGT
CGCGAGGAAG TTTCCGACAA GGAAGTTGCA GACAACATCA AGGCCACAAT GGCGCGTATG
GGTGGTGGTA ACACCAAAGG TATGGCCAGA GGCAAAGGCC GCCGACGCGA CCGCGGTGAT
CAGAACGATC CGAACGGCTT CGGAGATGAA GAAACAAAAG TATTGCGCGT AACCGAATTC
GTATCAGCCA ACGACCTCGC GTCGCTGATG GACGTAACGG TTCAGGAAGT AATATCGGTG
TGTATGAGCA TGGGTATGTT CGTATCCATC AACCAGCGTC TCGACGCCGA GGCCATCACA
TTCATCGCCG ATGAATTCGG CTTCGAAGTA GCGTTCATCT CGGCCGAAGA AGAGGTTCAG
AATGACGTTA CCGAAGAGGT GGATGATGAA GAAAGCCTGG TAGAACGTGC ACCGATCGTT
ACAATCATGG GTCACGTCGA TCACGGTAAA ACATCGCTCC TCGACTACAT CCGTCAGGAA
AACGTCGCCA GCGGCGAGGC AGGAGGTATT ACGCAGCACA TTGGTGCTTA CAGCGTGAAA
ACCAAAACCG GCAAACCGGT AACATTCCTC GATACGCCGG GTCACGAAGC ATTTACAGCG
ATGCGTGCCC GCGGTGCGAA AATCACCGAC GTTGTCATCA TCGTGATCGC AGCGGACGAC
AGCGTCATGC CGCAAACCCG CGAGGCGATC AACCACGCGC AGGTGGCCGG TGTACCGATT
GTATTTGCAT TCAGTAAAGT AGATAAGCCA GGTGCCAACA CGGAAAAAAT CCGCGAAGAG
CTGGCGAATA TGAACCTCCT GGTGGAAGAA TGGGGTGGTA AATACCAAAC TCAGGAAATT
TCTTCCAAAT CAGGATTGGG TATCGACGAA TTGCTTGAAA AAGTATTGCT AGAAGCGGAA
TTGCTCGAAC TGAAAGCGAA TCCGAACCGC CGTGCAGTTG GAACAGTGGT GGAAGCATCA
CTCGACAAAG GCCGCGGCTA CGTAACGACA ATCCTCGTTC AGACGGGTAC ATTGAAAGTC
GGCGACGTGG TATTGGCAGG TGCGCATTTC GGTAAAGTGA AAGCGATGAC CGATTACCTT
GGGAAAAGGC TCAAAACGGC AGGTCCGTCC ACGCCGGTGC AGCTGCTCGG TTTGAATGGC
GCGCCACAGG CCGGTGACCG TTTCAACGTA TTCGAAAATG AGCGCGACGC CCGCGACATC
GCTACCAAGC GTGAGCAGAT CCAGCGCGAG CAGTCGATCC GTACCCGCAA GCACATTACC
CTTGAAGAGA TCGGCCGTCG TAAGGCGATC GGTACTTTCC GCGAGTTGAA CCTCATCGTG
AAAGGTGACG TGGATGGTTC GGTAGAAGCA CTTTCCGATT CATTGCTGCA ACTTTCGACT
TCGGAAGTTC AGGTGAATAT CATTCACAAA GCAGTGGGTC AGATCTCCGA ATCGGATGTG
AACCTTGCGA TTGCTTCGGA TGCGATCATC GTCGGATTCC AGGTTCGTCC TTCTTCCAAT
GCGAAGAAAA TGGCCGAGCA GGATCAGATC GAGATCCGCC ACTATTCGGT AATCTACCAG
GCGATCGAGG AGATCAAAGA CGCGATGACC GGTATGTTGG CTCCGACGAT CGAAGAGATC
ATTACCGGAA ACATCGAAAT CCGCGAGGTA TTCAAAATCA GCCGCGTAGG AACGATTGCA
GGTTGCTACG TAACCGACGG ATACGTGAAA CGTAACAACA AGATCCGCGT GGTCCGCGAC
GGTATCGTAC TTTATACGGG TGAAATCGAC TCTCTGAAAC GTTACAAAGA CGATGTTCAG
GAAGTAAGAA ACGGTTACGA ATGTGGTTTG AGCGTCAAAA ACTACAACGA CATCGAAATC
GGCGATATCA TCGAAAGTTT CGAGCTTCGC GAAGTGAAAC GGACGCTTTA A
 
Protein sequence
MAEDKMMRLS QVARILNVGI TTIVDHLSAK GYKVESNPNT KINADQIEFL AKDFKSNELR 
SSLTQKPAAP AVEAPVEVKD DKVKSDVEGI LYFRNTPKAE EKPVVEEKPA ASEPAFENKL
PGIKVVGKID LDAKRPAVQP PAAPEERPAP EAPKEVVAES PKAAPAPVAK EEPKPVAAQP
EPVKETPVEA PAKETPAAPA APAAEAPAKE EPRPAAPAES KPEPVEPKET APVAAKPEPV
APQPAATPEE PSGESQLIEA RGEQLRGLRV VGKIELPSDK NKKKDPVASS DASADKKRRR
KRKRIRDGAA APGENRPAEG AAAANANAGT TNTGTDANRN RPNTPGTTQG GNQQGGQQRP
GQGGGNRSGN AGGNNRRGNR REEVSDKEVA DNIKATMARM GGGNTKGMAR GKGRRRDRGD
QNDPNGFGDE ETKVLRVTEF VSANDLASLM DVTVQEVISV CMSMGMFVSI NQRLDAEAIT
FIADEFGFEV AFISAEEEVQ NDVTEEVDDE ESLVERAPIV TIMGHVDHGK TSLLDYIRQE
NVASGEAGGI TQHIGAYSVK TKTGKPVTFL DTPGHEAFTA MRARGAKITD VVIIVIAADD
SVMPQTREAI NHAQVAGVPI VFAFSKVDKP GANTEKIREE LANMNLLVEE WGGKYQTQEI
SSKSGLGIDE LLEKVLLEAE LLELKANPNR RAVGTVVEAS LDKGRGYVTT ILVQTGTLKV
GDVVLAGAHF GKVKAMTDYL GKRLKTAGPS TPVQLLGLNG APQAGDRFNV FENERDARDI
ATKREQIQRE QSIRTRKHIT LEEIGRRKAI GTFRELNLIV KGDVDGSVEA LSDSLLQLST
SEVQVNIIHK AVGQISESDV NLAIASDAII VGFQVRPSSN AKKMAEQDQI EIRHYSVIYQ
AIEEIKDAMT GMLAPTIEEI ITGNIEIREV FKISRVGTIA GCYVTDGYVK RNNKIRVVRD
GIVLYTGEID SLKRYKDDVQ EVRNGYECGL SVKNYNDIEI GDIIESFELR EVKRTL