| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_4125 |
|---|
| Symbol | |
|---|
| ID | 8139499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | + |
|---|
| Start bp | 4709867 |
|---|
| End bp | 4713583 |
|---|
| Gene Length | 3717 bp |
|---|
| Protein Length | 1238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644871740 |
|---|
| Product | pyruvate ferredoxin/flavodoxin oxidoreductase |
|---|
| Protein accession | YP_003023898 |
|---|
| Protein GI | 253702709 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 0.543353 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGAA CCAGAAAAAC CATGGACGGC AACACCGCGG CGGCGCATGT CGCCTACGCG
CTGAGCGAGA CGGCTGCCAT CTACCCGATC ACCCCCTCCT CCACCATGGG GGAGGTCGCG
GACGAATGGG CGGCGGAGGG GCGCAAGAAC GTCTTCGGGC AGGTGCTGAA CATCAAGGAG
CTGCAGTCTG AGGCGGGAGC GGCGGGGTCG GTGCACGGCT CGCTGGTGGC GGGCGCCCTC
ACCACCACCT TCACCGCGTC GCAGGGGCTT TTGCTCATGC TCCCCAACAT GTACAAGATC
GCCGGCGAAC AGCTCCCCGG CGTGTTCCAC GTCTCGGCCC GCGCCGTCGC GACCCATGCG
CTCTCCATCT TCGGCGACCA CCAGGACGTG ATGGCGGCCC GCCCCACCGG CTTCGCCCTG
CTTTGTTCCT CGTCGGTGCA GGAGGTGATG GACCTGGCGC TGGTCGCGCA CCTGGCGGCG
CTTGAGGGAA GCATCCCCTT CCTGCACTTC TTCGACGGCT TCCGGACCTC CCACGAGGTG
CAGAAGATCG AGGTGATCGA GTACGAGGAG ATGGCGCGCC TGGTGAACCG CGAGAAGCTG
GCGGCGTTCC GCGCGAAGGC GATGAACCCG GAGCACCCGG AGCTGCGCGG CACCGCGCAA
AACCCCGACA TCTACTTCCA GGGAAGGGAG CGCGCGAATC CCCTTTACCA CGCGCTAACC
GCCGTGGTGA CCCAGACCAT GGACAAGGTG GGGCAGCTGA CCGGGCGGCA CTACCGCCTC
TTCGACTACA TAGGGCACGC GGAGGCGGAT CGGGTCATCG TCACCATGGG GTCCTCCTGC
GAGACCGCCG AGGAGGTGGT GCGCTACTTA AACGGCACAG GTGAGAAGGT GGGGCTCGTC
AAGGTGAGGC TGTACCGCCC CTTCGACGCG GAGGCGCTCC TTTCGGCGAT ACCGGCGTCC
GCCTGCAAGA TCACGGTGCT GGACCGCACC AAGGAGCCGG GCTCTTTGGG CGAGCCGCTC
TACCAGGACG TCTGCACCGC CTTCATGGAG CGCGGCGGAG CTGTCCCCGA ACTCTACGCG
GGGCGCTACG GCCTGGGCTC CAAGGAGTTC CGTCCGGTGC ACGTGAAAAG CATCTTCGAC
AACATGAACG GCTCTCCGGG CAAGCGCCAC TTCACGGTGG GGATCACCGA CGACGTGAGC
CACAGCTCGC TCCCGGTTGA GGGGACCCTT TCGACCACGC CGGAGGGGAC CATCCAGTGC
CGCTTCTGGG GGATGGGGGC GGACGGGACC GTCGGGGCCA ACAAGGCCGC CATCAAGATC
ATCGGCGACA ACACCGAGCT CTACGTGCAG GCCTATTTCT CCTACGACTC CAAGAAGTCC
GGGGGGATCA CCGTCTCCCA TCTGCGCTTC GGCGAAAGCC CGATCCAGTC CACCTACCTC
GTGGACGCCG CGGACTTCAT CTCCTGCCAG AAGGCCCCCT ACGTGCAGAT CTACGACCTT
CTGGAAGGGA TCAAGGAGGG GGGGACGTTT CTCCTGAACT CCCCGTGGAA CACGGTGGAG
GAGATGGAGC AGCACCTGCC GGCCGGCATG CGGCGCGACC TCGCCCGTAA GAAGGTGCGC
CTTTACAACG TGGACGCGAT CCGCATCGCC TCCGCCGCCG GGCTCGGCGG CCGCATCAAC
ATGATCATGC AGACCGCCTT CTTCAAGCTC TCCGGGGTGC TCCCCTTCGA ACGGGCCGTT
GAGCTCCTCA AGGACTCGAT CCGCAAGGAG TACGGCAGGA AGGGAGACCA GGTGGTCGAG
ATGAACCTCG CGGCCGTCGA CCTCGCGGTA CAAAGCCTGG TGCGGATCGA GTACCCGGAG
TCGTGGCAGG GCGCCGACGA CGAGCGCGGG CTGGACTTCC GCCTCTCGCA GCAGATGCCC
GACTACATGC GCGAGATGGT GTTCCCCATA CTGCGCCAGA AGGGGGACGA CCTCCCGGTC
TCCGCCTTCT CCCCCGACGG CGTCTTCCCC TTCTCCACCG CGCGCTACGA AAAACGCGGC
GTGGCCATCA ACGTACCGGA GTGGATCAAG GAGAACTGCA TCCAGTGCAA CCAGTGCTCC
TACATCTGCC CGCACGCCAC CATCCGCCCC TTCTTGGCCA CCGAGGAGGA GCTCTCCGGC
GCCCCGGAAA GCTTCGAGAC CATCCCCGCG AACGCCAAGG AGATCAAGGG GCACGGCTTC
CGGATCCAGG TCTATGCCCT GGACTGCATG GGTTGCGGCA ACTGCGCCGA CATCTGCCCG
GCCAAGGTTT CCGCCCTGGT GATGAAGCCG ATCGACACCC AATCCGAGGT ACAGGAGGTA
AACCGCAAGT TCGCCGAAAC GCTTGCCCCC AAGGGGCACC TGATGAAGCG CAACTCGGTG
ATCGGCAGCC AGTTCCAGCA ACCCCTTTTA GAGTTCTCCG GAGCCTGCTC CGGCTGCGGC
GAGACCCCCT ACGCACGCAT CGTCACCCAG CTTTTCGGCG AACGGATGAT GATAGCCAAC
GCCACCGGCT GCTCCTCCAT CTGGGGCGCC TCGGCGCCGG TCTCCCCCTA CTGCGCCAAC
GCGCAAGGGC ACGGCCCCGC GTGGAACAAT TCGCTCTTCG AGGACGCCGC CGAGTTCGGC
TTCGGCTACC ACATGGCCAT CTCGCAGCGG CGCGCGCTCC TGGCCGACCA GGTGCGCCAC
GCCGTCCAAA GCCTCCCGGA GGGGGAGCTG CATGAGGAGC TCTCCGGCTG GCTACAGGGG
ATGATGGACC CCGAGCTCTC CCGGCGCCAC GGCGACCGGC TCAAGACGCT CCTCCCGCAG
GCCGGCAACA ACGAGCTGCT GCAGCAGATA CTTTCCTCGG CCGACCTCTT CACCAAGAAA
TCGATCTGGA TCTACGGCGG CGACGGCTGG GCCTACGACA TCGGCTTCGG CGGCCTGGAC
CACGTCATCT CCACCGGCGA GGACGTGAAC CTCCTGGTGA TGGACACCGA GCTCTACTCG
AACACCGGCG GGCAGTGCTC CAAGGCCACC CAGTTGGGCG CCATAGCGCG TTTCGCCGCC
GCCGGGAAGC GGACCTCCAA GAAGGACCTG GGGCGCATGG CGATGACCTA CGGCTACGTC
TACGTCGCCT CCATCGCCAT AGGCGCCGAC AAGAACCAGA CCATGAAGGC GCTCGCCGAG
GCGGAGGCCT ACCCCGGCCC TTCGCTGGTG ATCGCCTACT CCACCTGCAT CAACCAGGGG
CTGCGTAAAG GTATGGGAAA ATCGATCGAG GAGAGCAAGC TGGCCGTGAA ATGCGGCTAC
TGGCCGCTGT ACCGCTACAA CCCGCTTTTG AAGCTGGAAG GGAAGAACCC TTTCGTACTG
GAATCGAAGC AGCCCGACGG CTCCCTAGCC GAATTCCTCT CCGGGGAGGT GCGCTATCAG
GCCCTTGAGA AACAAAACCC CGAGGTCGCG CGCGAACTGC GCCGGCAGAT GGAGCAGGAG
GCGCTTGAGC GCTTCCGGGT ACTGAAGGAA ATGGCCGACT GGCAGCCGAC GACAGGCGAT
GTCCCGGAGG ACGGCGGGAG GAGCCACGAC CACGTCCCAG CCGCGGCAGG CGCCACCGAG
GAGCCGGCGC CGGTCTGCGT CAGCGCCACC AGCGACCCCC GCTACAGCCG GCCCGGGCAG
CCCGAGGAGG AGTGCGACGA CGGCCGCGCC GGCATCGACA AGAAGATCAA GGAGTGA
|
|---|
| Protein sequence | MSGTRKTMDG NTAAAHVAYA LSETAAIYPI TPSSTMGEVA DEWAAEGRKN VFGQVLNIKE
LQSEAGAAGS VHGSLVAGAL TTTFTASQGL LLMLPNMYKI AGEQLPGVFH VSARAVATHA
LSIFGDHQDV MAARPTGFAL LCSSSVQEVM DLALVAHLAA LEGSIPFLHF FDGFRTSHEV
QKIEVIEYEE MARLVNREKL AAFRAKAMNP EHPELRGTAQ NPDIYFQGRE RANPLYHALT
AVVTQTMDKV GQLTGRHYRL FDYIGHAEAD RVIVTMGSSC ETAEEVVRYL NGTGEKVGLV
KVRLYRPFDA EALLSAIPAS ACKITVLDRT KEPGSLGEPL YQDVCTAFME RGGAVPELYA
GRYGLGSKEF RPVHVKSIFD NMNGSPGKRH FTVGITDDVS HSSLPVEGTL STTPEGTIQC
RFWGMGADGT VGANKAAIKI IGDNTELYVQ AYFSYDSKKS GGITVSHLRF GESPIQSTYL
VDAADFISCQ KAPYVQIYDL LEGIKEGGTF LLNSPWNTVE EMEQHLPAGM RRDLARKKVR
LYNVDAIRIA SAAGLGGRIN MIMQTAFFKL SGVLPFERAV ELLKDSIRKE YGRKGDQVVE
MNLAAVDLAV QSLVRIEYPE SWQGADDERG LDFRLSQQMP DYMREMVFPI LRQKGDDLPV
SAFSPDGVFP FSTARYEKRG VAINVPEWIK ENCIQCNQCS YICPHATIRP FLATEEELSG
APESFETIPA NAKEIKGHGF RIQVYALDCM GCGNCADICP AKVSALVMKP IDTQSEVQEV
NRKFAETLAP KGHLMKRNSV IGSQFQQPLL EFSGACSGCG ETPYARIVTQ LFGERMMIAN
ATGCSSIWGA SAPVSPYCAN AQGHGPAWNN SLFEDAAEFG FGYHMAISQR RALLADQVRH
AVQSLPEGEL HEELSGWLQG MMDPELSRRH GDRLKTLLPQ AGNNELLQQI LSSADLFTKK
SIWIYGGDGW AYDIGFGGLD HVISTGEDVN LLVMDTELYS NTGGQCSKAT QLGAIARFAA
AGKRTSKKDL GRMAMTYGYV YVASIAIGAD KNQTMKALAE AEAYPGPSLV IAYSTCINQG
LRKGMGKSIE ESKLAVKCGY WPLYRYNPLL KLEGKNPFVL ESKQPDGSLA EFLSGEVRYQ
ALEKQNPEVA RELRRQMEQE ALERFRVLKE MADWQPTTGD VPEDGGRSHD HVPAAAGATE
EPAPVCVSAT SDPRYSRPGQ PEEECDDGRA GIDKKIKE
|
|---|
| |