Gene GM21_3992 details

Gene Information

• Locus tag: GM21_3992
• ID: 8139366
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sp. M21
• Kingdom: Bacteria
• Replicon accession: NC_012918
• Strand: +
• Start bp: 4574870
• End bp: 4575514
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 644871608
• Product: channel protein, hemolysin III family
• Protein accession: YP_003023766
• Protein GI: 253702577
• COG category: [R] General function prediction only
• COG ID: [COG1272] Predicted membrane protein, hemolysin III homolog
• TIGRFAM ID: [TIGR01065] channel protein, hemolysin III family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 0.0000000238096
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGACATAG TCAAGCGTCA GCAGTCAGCA GAGGAAGAAA TCGCCAACAG CATCAGCCAT 
GCTGTCGGTT TGATCGCGGC CATCGCGGCG ACTCCGCCGC TTCTTTCCAG GGCATTCAGC 
TACGGAGAGA CGGGGTACGC CGTCGGTACA GCGATATTTG CCGCAACCAT GGTTCTGCTT 
TATTTCGCCT CCTCCGTCTA CCACGCCATG CCCCCGGGAA AATTGAAGGA GTTGTTCAAG 
ACCATAGAAC ACTCGGCGAT CTATCTCCTG ATAGCCGGGA CCTACACCCC CTTTTCCCTT 
GGCGCGCTAC GCGGCCCCTG GGGGTGGACT CTTCTACTGC TGGTCTGGAC TTTGGCGACG 
GTCGGAGTCG TGTGGAAGTT CTGTCAAAAG ATGTCGCGCC CCGTAGCGTC CACTGTCCTC 
TATCTGGCAA TGGGATGGCT CATCATAGTC GCCGTGAAAC CCCTGCTCGC CCGTGTCCCG 
CTAGCGGGCC TTCTGTGGAT AGCCGCCGGC GGGGCGGCAT ACACACTTGG CGTCGTGTTC 
TTCGCCTACG ATTCCCGCCT GCGTTTCGGA CACTTCATTT GGCACCTGTT CGTAATGGCA 
GGCACGGCCT GCCACTTCTG GGCAATAATC TGGTACGCCT TGTGA 

 

Protein sequence

MDIVKRQQSA EEEIANSISH AVGLIAAIAA TPPLLSRAFS YGETGYAVGT AIFAATMVLL 
YFASSVYHAM PPGKLKELFK TIEHSAIYLL IAGTYTPFSL GALRGPWGWT LLLLVWTLAT 
VGVVWKFCQK MSRPVASTVL YLAMGWLIIV AVKPLLARVP LAGLLWIAAG GAAYTLGVVF 
FAYDSRLRFG HFIWHLFVMA GTACHFWAII WYAL