| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_3904 |
|---|
| Symbol | |
|---|
| ID | 8139278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | + |
|---|
| Start bp | 4490646 |
|---|
| End bp | 4493198 |
|---|
| Gene Length | 2553 bp |
|---|
| Protein Length | 850 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644871521 |
|---|
| Product | alpha-glucan phosphorylase |
|---|
| Protein accession | YP_003023679 |
|---|
| Protein GI | 253702490 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0058] Glucan phosphorylase |
|---|
| TIGRFAM ID | [TIGR02094] alpha-glucan phosphorylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.0004418 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGA GCTCAACGCT GCACAGATTT ACCGTCGTCC CCTCGCTTCC CAAAGAGCTT
GCTGGGCTGC AGCGCATCGC CTACAACCTC TGGTGGAGCT GGGAACCCGA GGCCATCGGC
CTTTTCAAAC GGCTGGACCC CGAACTCTGG CGCCTGACGC GCCACAACCC CCTCGAGGTG
CTGGGAAGCC TGCAGCAGGC GACCTTCGAG AGCCTGATGG CGGACGAGGG GTTCATGTCC
CACCTCTCGC AGGTAGAGGA GCGGCTCACC GAATACCTCT CCTCCCGCAC CTGGTACGAG
CGGCACGGCA ACCCCGGCGC CCGCATCGCC TACTTCTCCA TGGAATTCGG CCTGCACGAG
TCGCTCCCCA TCTACTCCGG GGGGCTCGGC ATCCTCGCGG GCGACCACCT CAAATCCGCC
AGCGATTTAG GACTCCCCCT GGTCGGCGTC GGGCTTTTGT ACCGTCAGGG GTACTTCCGC
CAGTACCTGA ACCTGGAAGG GTGGCAGCAG GAAATCTACC CGGAAAACGA CTTCTACAAC
CTCCCGCTGC ACCAGGAGAG GGACAGGGAA GGAAAGCCCC TGGCGTTCTC CCTGGAGTAC
CCGGGGAGGA ATGTGCGGGT GCAGGTCTGG CGGGTGCAGG TAGGGCGGGT CAACCTCTAC
CTCCTGGACA CGAACCTCGA GGAGAATTCC CCCGCCGACC GCGAGATCAC CACCAGGCTC
TACGGCGGCG ACCAGGAGAT GCGGATCAGG CAGGAGATCC TGCTCGGCAT CGGCGGCGTC
CGGGCGCTGA GGCTTTTGGG GGCCGAGCCC AACGTCTGCC ACATGAACGA GGGGCACGCC
GCCTTCCTGG CGCTGGAGCG GATCCGCTCC CTGATGGAGC AGCGCCAGCT CAACTTCCGG
GAGGCGATGG AGGCGGTGAG AGGCGGCAAC GTCTTCACCA CCCACACGCC GGTCGAGGCC
GGGATCGACC ATTTCCCACC CGACCTCCTC GACCAGTACA TGGGTCATTA CTACCGCAGC
CTCGGGCTCT CCCGCGAGCA GTTCATGGCC CTGGGGATGC AGAACCACGG CAGGAGCAAC
GAAAGTTTCT GCATGGCGGT GCTCGCCATG AAGCTCTCGC TCCACTCGAA CGGGGTGAGC
GAACTGCACG GGGAGGTGTC GCGCAGGATG TGGGCGGACG TCTGGCCGGA CCTCCCCGAG
GAACAGCTCC CCCTTACCTA CGTCACCAAC GGGGTGCACC AGAAGAGCTG GCTCTCGGAG
GAGATGACCG GCCTGTTGAT CCGGTTCCTC GGCACCAGAT GGCTGGAGCA AAGCGCCGAC
CAGCTCTGGC GCAGGGTCTC GCGCATCCCG GACGCGGAAC TTTGGCGCAC GCACCGGCGC
GGCACCGAGC AGCTGGTCGA CTACGCGCGC CGCAGCCTGA GGGCGCAGTT GGAGAAGCTC
GACGCCTCCG CCAAGGAGAT CGACGCGGCA GGCGACGTCC TCGACCCGGA GATACTCACC
ATCGGCTTCG CGCGCCGCTT CGCCACCTAC AAGCGAGGGA CGCTCCTGTT GCACGACAAG
GAGCGGCTTT TCAGGATACT GAACCATCCC GAGCGGCCGG TGCAGATCGT CTTCGCCGGG
AAGGCGCACC CCGCCGACCA CCAGGGTAAG GAGCTGATCC GCCAGATCGT GCAGCTGTCG
CAGCAGCCCG AATTCCGGCG CCGCATCGTC TTCCTGGAGG ATTACGACAT CTCGGTGGCC
CGGCGCCTGG TGCAGGGGGT GGACGTCTGG CTCAACACGC CGCTCAGGCC CCTGGAGGCC
AGCGGCACCA GCGGCATGAA GGTCGCCTTC AACGGCGGCC TCAACCTGAG CATCCTGGAC
GGGTGGTGGT GCGAGGGGTA CCGCGGGAAC AACGGCTGGG CCATAGGGCG CGGCGAGGTG
TACGACGACC TGGCCTACCA GAACCAGGTG GAGAGCCGCG CCATCTATGA CCTTCTGGAG
AAGGAGATCG TGCCCCTTTT CTACAACCGG GGGAGCGACG GCATCCCGCG CGGCTGGACC
GCCTTCATGA AGAGCTCGAT GCAGACGCTC TGCCCGGTGT TCAGCACGGA CCGGATGGTG
CAGGAGTACG CCAGGCGCTG CTACCTTCCC GCCTTCGAGC ACTGGGAGCG GCTGAACCGC
GACAACCTGA GGCTCGCGGT GGAGCTGGCG CGCTGGAAGG AGCGGCTGCA CGGCATGTGG
GGTGAGCTTT CCATCGTGGC GGTCCACGCC GAGATCCGGA AGGAAGTGAC GGTGGGGGAG
ATGCTCCCCA TCACGGTGCA GATCACGCCG GGACGGATCC CCCTTTCGGA GATCGCGGTC
GAGGTATATT TCGGAGTGCT CGATTCCCGC GGCGCCATCA TCGGGGGGGA GATCGTGCCG
CTTGAGCCTG CGGCCGACCC GGAAAAGGCG GGGCACTTCG GCGGGGAACT GGAGTGCCGC
TTCTGCGGCA GGCACGGCTT CATGCTGCGG GTAATGCCCA GGCACCCTGA GCTTGGGACC
GTGTACGATC CGGGGTTGAT ACTCTGGGGC TGA
|
|---|
| Protein sequence | MNLSSTLHRF TVVPSLPKEL AGLQRIAYNL WWSWEPEAIG LFKRLDPELW RLTRHNPLEV
LGSLQQATFE SLMADEGFMS HLSQVEERLT EYLSSRTWYE RHGNPGARIA YFSMEFGLHE
SLPIYSGGLG ILAGDHLKSA SDLGLPLVGV GLLYRQGYFR QYLNLEGWQQ EIYPENDFYN
LPLHQERDRE GKPLAFSLEY PGRNVRVQVW RVQVGRVNLY LLDTNLEENS PADREITTRL
YGGDQEMRIR QEILLGIGGV RALRLLGAEP NVCHMNEGHA AFLALERIRS LMEQRQLNFR
EAMEAVRGGN VFTTHTPVEA GIDHFPPDLL DQYMGHYYRS LGLSREQFMA LGMQNHGRSN
ESFCMAVLAM KLSLHSNGVS ELHGEVSRRM WADVWPDLPE EQLPLTYVTN GVHQKSWLSE
EMTGLLIRFL GTRWLEQSAD QLWRRVSRIP DAELWRTHRR GTEQLVDYAR RSLRAQLEKL
DASAKEIDAA GDVLDPEILT IGFARRFATY KRGTLLLHDK ERLFRILNHP ERPVQIVFAG
KAHPADHQGK ELIRQIVQLS QQPEFRRRIV FLEDYDISVA RRLVQGVDVW LNTPLRPLEA
SGTSGMKVAF NGGLNLSILD GWWCEGYRGN NGWAIGRGEV YDDLAYQNQV ESRAIYDLLE
KEIVPLFYNR GSDGIPRGWT AFMKSSMQTL CPVFSTDRMV QEYARRCYLP AFEHWERLNR
DNLRLAVELA RWKERLHGMW GELSIVAVHA EIRKEVTVGE MLPITVQITP GRIPLSEIAV
EVYFGVLDSR GAIIGGEIVP LEPAADPEKA GHFGGELECR FCGRHGFMLR VMPRHPELGT
VYDPGLILWG
|
|---|
| |