Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GM21_3848 |
Symbol | |
ID | 8139222 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sp. M21 |
Kingdom | Bacteria |
Replicon accession | NC_012918 |
Strand | - |
Start bp | 4431343 |
End bp | 4432095 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644871465 |
Product | RNA polymerase, sigma 28 subunit, FliA/WhiG |
Protein accession | YP_003023623 |
Protein GI | 253702434 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 0.0000368687 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACTGTC TTCTTAAGGC GTACGAGAAC GAGGCGCAAC GCGGGGTGCC GATGAGCAGG GACGAACTGG TGGTCACCCA CCTCCCCTTG GTGAAGTTCA TCGTGGACCG GATCGCCTCT TCGCTTCCCC CGCACCTGGA CCGCGACGAT CTGAGGAGCG CCGCGGTGAT CGGGCTGATA TCCGCCGCCG AGCGCTTCGA TCCCGCCCGC GGTGTGCAGT TCAAGACCTT CGCCGAGCAG CGCATCCGCG GCACCATCAT GGACGAGCTG AGGGCGCAGG ACTGGCTCAC CAGGAGCCTC AGGGACAAGT TCAAGAAACT GGAGCGCGAG TTCTCGCAAC TGGAGCAGCG CCTGGGGAGG AACCCCTCCA GCGACGAGGT GGCGCTCGCC ATGGGGCTGG AGCTGAAGGA CTACTTCCGG CTCCTGGAGG AGATCCACCT CCTCTCCTTC GTCTCCCTCG ACGACGCCTG GCACGACGAG GACGGCGCTC CCTTCGGGCT TCTGGACGTC CTGGAGGACA AGGGGACCGA GAGCCCGCAG AGCCAGCTGA TCGCGCGCCA GACCGTGGAG CGCCTGGCCG AGGCGATCGA CGCCCTGCCG GAGAAGGAGC GCATCGTGGT CACGCTCTAC TACTACGAGG AGCTGAACTT GAAGGAGATC GGCGCCGTCC TGGACCTCAC CGAATCGAGA ATCTCGCAGC TGCACAGCCA GGCCATCATC AGGCTGCGCG GCAAGATGAA GCGCCTGGGC TAG
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Protein sequence | MNCLLKAYEN EAQRGVPMSR DELVVTHLPL VKFIVDRIAS SLPPHLDRDD LRSAAVIGLI SAAERFDPAR GVQFKTFAEQ RIRGTIMDEL RAQDWLTRSL RDKFKKLERE FSQLEQRLGR NPSSDEVALA MGLELKDYFR LLEEIHLLSF VSLDDAWHDE DGAPFGLLDV LEDKGTESPQ SQLIARQTVE RLAEAIDALP EKERIVVTLY YYEELNLKEI GAVLDLTESR ISQLHSQAII RLRGKMKRLG
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