Gene GM21_3808 details

Gene Information

• Locus tag: GM21_3808
• Symbol: rho
• ID: 8139182
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sp. M21
• Kingdom: Bacteria
• Replicon accession: NC_012918
• Strand: -
• Start bp: 4378892
• End bp: 4380139
• Gene Length: 1248 bp
• Protein Length: 415 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 644871427
• Product: transcription termination factor Rho
• Protein accession: YP_003023585
• Protein GI: 253702396
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 110
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACCTAC AGGAACTTAA AGAAAAGAAG ATCAACGATC TCACTGCGAT TGCCAAGGGG 
CTCAACATCG AGGGGGCTTC CAGTCTCAGG AAGCAGGACC TGATCTTCGC CATTCTCAAT 
GCCCAGACTG AGAAGAACGG GATGATCTTC GGCGAGGGCG TTTTGGAGAC GCTCCCTGAC 
GGTTTCGGCT TCCTGAGGGC GCCGGATTAC AACTACCTGC CGGGGCCGGA CGACATCTAC 
GTCTCGCCGT CGCAGATCCG CCGCTTCAAC CTGCACACCG GCGACACGGT GGCGGGCCAG 
ATCAGGCCTC CCAAGGAAGG GGAGCGCTAC TTCGCCCTTT TGAAGGTCGA GACGGTGAAC 
CACGAGTCGC CGGAGGTTGC GCGCGACAAG ATCCTTTTCG ACAACCTGAC TCCGCTCTAC 
CCGCAGGAAA AGCTGAAGCT AGAGACCACG CACGACAACA TGTCGACCCG GGTCATGGAG 
CTGATCGCGC CGATCGGGAA GGGGCAGAGG GGGCTCATCG TGGCGCCGCC GAGAACCGGC 
AAGACCATGC TGATCCAGAA CATCGCCAAC TCCATCGCCA TGAACCACCC CGAGGTGTTC 
CTGATCGTCC TTTTGATCGA CGAAAGGCCC GAGGAGGTGA CCGACATGCA GCGCTCGGTG 
AAGGGCGAGG TGATCTCCTC CACCTTCGAC GAGCCGGCCT CGCGCCACAT CCAGGTGGCC 
GAGATGGTCA TCGAGAAGGC CAAGCGGCTG GTCGAGCACA AGCGCGACGT CGTCATCCTG 
CTCGATTCCA TCACCCGACT GGCCCGCGCC TACAACACTG TGATCCCGCC CTCCGGCAAG 
ATCCTCTCCG GCGGCGTCGA TTCCAACGCC CTGCATAAGC CCAAGCGCTT CTTCGGCGCG 
GCCCGCAACA TCGAGGAAGG GGGCTCGCTC ACCATCATCG CCACCGCGCT GGTCGACACC 
GGCTCCAAGA TGGACGAGGT CATCTTCGAG GAGTTCAAAG GTACCGGCAA CATGGAGCTC 
CACCTGGACC GGAAGCTGGT CGAGAAGAGG ACCTTCCCCG CCATCGACAT CAACAAGTCC 
GGCACCAGGA AGGAGGAACT CCTGATCGAC AAGGCGTCCC TGAACCGGAT CTGGATACTC 
AGGAAGGTGC TGCACCCCAT GAACGTGGTC GACTCCATGG AGTTCCTGAT CTCCAAACTG 
CAGGGGACCA AGAGCAACCA GAACTTCCTT GATTCCATGA GCAAGTAA 

 

Protein sequence

MNLQELKEKK INDLTAIAKG LNIEGASSLR KQDLIFAILN AQTEKNGMIF GEGVLETLPD 
GFGFLRAPDY NYLPGPDDIY VSPSQIRRFN LHTGDTVAGQ IRPPKEGERY FALLKVETVN 
HESPEVARDK ILFDNLTPLY PQEKLKLETT HDNMSTRVME LIAPIGKGQR GLIVAPPRTG 
KTMLIQNIAN SIAMNHPEVF LIVLLIDERP EEVTDMQRSV KGEVISSTFD EPASRHIQVA 
EMVIEKAKRL VEHKRDVVIL LDSITRLARA YNTVIPPSGK ILSGGVDSNA LHKPKRFFGA 
ARNIEEGGSL TIIATALVDT GSKMDEVIFE EFKGTGNMEL HLDRKLVEKR TFPAIDINKS 
GTRKEELLID KASLNRIWIL RKVLHPMNVV DSMEFLISKL QGTKSNQNFL DSMSK