| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_3789 |
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| Symbol | |
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| ID | 8139163 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sp. M21 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012918 |
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| Strand | - |
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| Start bp | 4362595 |
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| End bp | 4364349 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644871408 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
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| Protein accession | YP_003023566 |
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| Protein GI | 253702377 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 118 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGA AAAGCATGGA CGAAGTGAAG CAGCTCATCG ACCTGGGCAA GGAAAAGGGT
TTTCTCACCT ATGAAGAGGT GAACGACCTG CTTCCCCCTG ACATCGTCTC CTCCGACCAG
ATCGACGACG TCATGAGCAT GTTTGGCGAT ATGGACATCG AGATAGTCGA CTCAGCCCAG
AAAGTAAAGA TCCCGAAGAT CAAGATGGAT CTGGAAGAAG AGGAAGAGCA CGAAGGGAGT
GAGGAGGAAG TCGAGTTCGA GCCCGGCACC CTCGGTCGTA CCAGCGATCC CGTTCGCATG
TACCTGCGCG AGATGGGGTC CGTTTCGCTT TTGACCCGCG AGGGAGAGGT AGAGATCGCC
AAGAGGATCG AGGTGGGCGA GCGCGACGTC GCCAGCGTCA TCCTGAACAC TCCGATCACG
GTGAGAGAGG TCGTCTCCCT TGGTGAGCGT CTCAGGAAGC AGCAGATCGG CGCCATCGAG
ATCTCCAAGG ACGTCGAGGA AGAGGTGCTG GAGGAGGGGG AAGAGGATCT CCAGGCCCTC
AAGGTGCTCA CCATCATCGA CGAGATCAAG GAAATCGAAC AGCGGATGAG CGAGATCCAG
TCTGCTCTGG AGGCCGAGAA GGTCGCCGCA AAGGAGCGCG AGGCTCTGGG CGCCGAGCAC
GCCGAGCTCA AGGTGAAGAT GGCGGAGACC CTCAAGTCGC TGCGCCTGAA GGACCGCCAC
ATCGAGAAGA TCGCCCAGCG CCTGAAGGAG CTTTCCTGCA AGGTCGACAC GGTCATGCAG
GAGATCGCCG AGCTGGAGAA GGAAAGCGGC GCCGAGAGGG AGCCTTTCCT TACCGCCTTC
GAAGGGGCGA AGGGGGGCTC CGAGGCGGAC TTCCAGAAGA AGCTGAACAT GACGCTGGAG
GAGGGGCAGA AGCTCGAGAA GCGCTTCCGT TCCAGCGAAG CGAAATTGAA GAAGATCGAG
CAGGAGTCCG GCTTCAAGGC GAGCGAGCTC GCCAACGCCC TGCTCGCCAT CGAAGAAGGT
GAGCACAAGG CGAAGCTGGC CAAGAGCGAA CTGGTCGAGG CCAACCTCCG CCTGGTCGTC
TCCATTGCCA AGAAGTACAC CAACCGCGGT CTGCAGTTCC TGGACCTGAT CCAGGAAGGG
AACATCGGCC TCATGAAGGC TGTCGATAAG TTCGAGTACC AGCGAGGTTA CAAGTTCTCG
ACCTACGCCA CCTGGTGGAT CCGCCAGGCC ATCACCCGCG CCATCGCGGA CCAGGCCCGT
ACCATCAGGA TCCCGGTGCA CATGATCGAG ACCATCAACA AGCTGATCCG TACCAGCCGT
CAGCTGGTGC AGGAGATCGG CCGCGAGCCC TCCCCCGAGG AAATCGCCGA GCGCATGGCG
CTGCCGCTGG ACAAGGTGCG CAAGGTCCTG AAAATCGCCA AGGAGCCGAT CTCCCTGGAG
ACCCCGATCG GCGAGGAAGA AGATTCCCAT CTTGGGGACT TCATCGAGGA CAAGGGTGTG
GTCTCCCCCC TGGAGGCGGT GATCAAGGCG AACCTTTCCG AGCAGACCTC CCGGGTGCTC
TCCACCCTCA CCCCCCGCGA GGAAAAGGTG CTCCGGATGC GCTTCGGCAT CGGCGAGAAG
AGCGACCATA CCCTCGAGGA GGTGGGCCAG GACTTCGAGG TCACGCGCGA AAGGATCCGG
CAGATCGAGG CGAAGGCGCT CAGGAAGCTG CGCCATCCCA GCCGGGCCAA GAAGCTGAAA
AGCTTCGTAG AGTAA
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| Protein sequence | MAKKSMDEVK QLIDLGKEKG FLTYEEVNDL LPPDIVSSDQ IDDVMSMFGD MDIEIVDSAQ
KVKIPKIKMD LEEEEEHEGS EEEVEFEPGT LGRTSDPVRM YLREMGSVSL LTREGEVEIA
KRIEVGERDV ASVILNTPIT VREVVSLGER LRKQQIGAIE ISKDVEEEVL EEGEEDLQAL
KVLTIIDEIK EIEQRMSEIQ SALEAEKVAA KEREALGAEH AELKVKMAET LKSLRLKDRH
IEKIAQRLKE LSCKVDTVMQ EIAELEKESG AEREPFLTAF EGAKGGSEAD FQKKLNMTLE
EGQKLEKRFR SSEAKLKKIE QESGFKASEL ANALLAIEEG EHKAKLAKSE LVEANLRLVV
SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK FEYQRGYKFS TYATWWIRQA ITRAIADQAR
TIRIPVHMIE TINKLIRTSR QLVQEIGREP SPEEIAERMA LPLDKVRKVL KIAKEPISLE
TPIGEEEDSH LGDFIEDKGV VSPLEAVIKA NLSEQTSRVL STLTPREEKV LRMRFGIGEK
SDHTLEEVGQ DFEVTRERIR QIEAKALRKL RHPSRAKKLK SFVE
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