| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_3334 |
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| Symbol | |
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| ID | 8138696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sp. M21 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012918 |
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| Strand | - |
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| Start bp | 3856389 |
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| End bp | 3860537 |
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| Gene Length | 4149 bp |
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| Protein Length | 1382 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644870947 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_003023117 |
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| Protein GI | 253701928 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0000000000000613866 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGAAGACA TTTTTAATTT TTTCGATAAG CCGAAGGACC CGCTCCACTT CTCTTCCATC
AAGATCTCGA TCTCCTCGCC GGACAAGATC CGCGAGCGTT CCTTCGGGGA AGTGAAGAAA
CCGGAAACCA TCAACTACCG TACCTTCAAA CCGGAGCGCG ACGGCCTCTT CTGCGCCAAG
ATCTTCGGAC CGACCAAGGA CTACGAGTGC AACTGCGGCA AGTACAAGCG CATGAAGCAC
CGCGGCATCG TCTGCGAGAA GTGCGGCGTC GAGGTCATCC CCTCCAAGGT GCGCCGCGAG
CGCCTGGGTC ACATCGACCT GGCCACCCCG GTGGCACACA TCTGGTTCCT GAAGTCGCTC
CCGTCCAGGA TCGGCAACTT GATGGACATC ACCCTGAAGG ACCTCGAGAA GGTGCTCTAC
TTCGAGGCTT ACGTGGTGAC CGACCCGAAG GAGACCGGCC TTGCCTTCGG CACCGTCTTC
TCCGAGGACC AGTACCAGAA GGCGCTCGAG GAGTACAGCT ACGGCTTCGA GGCCGGCATG
GGGGCTGCGG CTATCCGCAC CTGCCTCACC TCGATGGACC TGGACCAGCT CTCCGAGCAG
CTCCGCATCG AGATGCAGGA GGCAACCTCG GAGGCCAAGC GCAAAAAGAC GGCCAAGCGC
CTCAAGGTCA TGGAGGCGTT CAAGAACTCG GGCAACAAGC CTGAGTGGAT GATCCTCGAG
TGCATCCCGG TCCTGCCGCC GGAACTCCGC CCGCTGGTCC CCTTGGACGG CGGCCGCTTC
GCTACCAGCG ACCTGAACGA CCTGTACCGC CGCGTCATCA ACCGCAACAA CCGCTTGAAA
CGCCTGATGG AGCTGCAGGC CCCTGAGGTC ATCATCAGGA ACGAGAAACG CATGCTGCAG
GAGGCGGTCG ACGCGCTGTT CGACAACGGC CGCCGCGGCC GCGCCATCGC CGGGCCCAAC
AAGCGTCCGC TCAAGTCGCT CTCCGACATG CTCAAGGGGA AGTCGGGTCG CTTCCGTCAG
AACCTTCTCG GTAAGCGCGT CGACTACTCC GGCCGTTCCG TCATCGTCGT CGGTCCGGAA
CTGCGCCTGC ACCAGTGCGG TCTGCCGAAG AAGATGGCTC TCGAGCTCTT CAAGCCGTTC
ATCTACAACA AGCTCGAGGA GCGCGGCTTC GTCACCACCA TCAAGAGCGC CAAGAAGATG
GTGGAGAAGG AGAAGCCGGA GGTCTGGGAC GTGCTGGAGG AGGTCATCAA GGAGCATCCG
GTTCTCTTGA ACCGCGCCCC GACTCTGCAC AGGCTCGGCA TCCAGGCCTT CGAACCTGTT
CTGATCGAGG GTAAAGCGAT CCAGCTCCAC CCGCTGGTCT GCACCGCCTT CAACGCCGAC
TTCGACGGCG ACCAGATGGC GGTCCACCTC CCCCTCTCCG TGGAGAGCCA GGTGGAGGCG
CGCGTCCTCA TGATGTCGAC CAACAACATC CTGTCGCCTG CGCACGGCAA GCCGATCATC
GTCCCTTCGC AGGACATGGT TCTCGGCATC TACTACATGA CCCGCGAGAA GCACTTCGCC
CTGGGCGAAG GGAAAATCTT CGCCTCCGCC GACGAGGTCA ACATCGCCTG GGACGCTGGT
GAGATCCACC TGCAGGCGCG CATCAAGGTC AGGATGAAGA ACCTCGTCTC CGACGAGAAG
CCGACCCTGA TCGAGACCAC CACAGGCCGC GTGCTTCTGC GCGACATCCT GCCGGACGCG
GTGCCGTATG CGACCATCAA CAAGGTCATG ACCAAGAAGG AACTCTCCAA CCTGGTGGAC
GTCTGCTACC GTCTGGCCGG GAACAAGGAG ACGGTCATTC TCGCCGACAA GCTGAAGGCG
ATCGGTTTCC GTTACGCGGC GAAAGCGGGC ATTTCCATCT CGATCAACGA CATGGTCATC
CCGGAAGGAA AGCCGGCCAT CATCACCCGC GCCACCGAAG AGGTGCAGGA GATCCAGAAC
CAGTACACCG AGGGTCTCAT CACCGACGGC GAACGCTACA ACAAGGTCAT CGACATCTGG
GCGAAATCCA CCGAGGACAT CGCCAAGGAG ATGCTGGACA ACCTCTCCCG CGACACCATC
CTCGATCCGG AAGGCAAAGA AGTGAAGGTC CCCTCCTTCA ACGCGATCCA CATGATGGCC
GACTCGGGCG CAAGGGGTAG CGCGCAGCAG ATCCGCCAGC TGGCAGGGAT GAGGGGACTC
ATGGCGAAGC CTTCCGGCGA GATCATCGAG ACCCCGATCA CCGCGAACTT CCGCGAGGGT
CTCACCGTGC TCCAGTACTT CATCTCCACC CACGGCGCAC GTAAGGGTCT GGCCGATACC
GCGCTCAAGA CGGCGAACTC CGGCTACCTC ACCCGCCGTC TGGTCGATGT CGCCCAGGAC
GCCATCATCA CCGAGGCGGA CTGCGGCACC ATCGACGGGC TTACCGTCTC CTCCCTCACC
GAGGGTGGCG AGGTCATCGA GCACATCGGC GACCGCATCC TGGGGCGCGT GGCACTGGAC
GACATCCTCG ACCCGGTCAC CGGCGACGTG CTGGTTCCGG CCAACGAGGA GATCGACGAG
AACCTTGTGG CAAGGATCGA GGCTGCGGGT CTGGAGAAGG TCAAGATCCG TTCGGTGCTC
ACCTGCGAGA GCCGCCGCGG CATCTGCGCC AAGTGCTACG GCCGCGACCT GGCACGCGGA
CACCTTGTGA ACCGCGGCGA GGCGGTCGGC GTCATCGCCG CCCAGTCCAT CGGCGAGCCG
GGTACCCAGC TCACCATGCG TACCTTCCAT ATCGGTGGTA CGGCTTCCAG GCGCGCCGAG
CAGACCGCGT TGGAGGCGAG GAACGAGGGT TTCGCCAAGT TCATCAACAT CAACTACGTC
ACCAACTCGG AAGGGCACCA CATCGTCATG AACCGCAACG GCGAACTCGC CATCGTGGAC
GAGACCGGGC GCGAGCGCGA GAAGTACGGC GTCGTCTACG GTGCGAAGAT CAAGGTGAGC
CCGCAAGAGA AGGTCACCCA GGGGCAGTCG GTCGCCGAGT GGGACCCGTA CACCATGCCG
ATCCTCACCG AGATCGCCGG CCGGGTCAAG TTCGGGGACG TCATCGAGGG TGTCACCATG
GAGGAGCAGG TCGACGAAGT CACCGGTCTC TCCAGGAAGG TCATCATCGA GACCCGCGAC
GCCGACAAGC GCCCGCGCAT CACCATCAAG GACGAGAGCG GCAAGACCGC GAAGATCGGC
GACAGCCTTT TGGCCCGCTA CTACCTCCCG GTAGGCTCCA ACATCAACGT GCTGGAGGAT
ACCGAGGTGA ACGCAGGCGA CGTGATCGCC AAGATTCCGC GTGAAACAAC CAAGACCAAG
GACATCACCG GCGGTCTGCC GCGCGTCGCC GAACTCTTCG AGGCGCGGAA GCCCAAGGAC
TTCGCGGTCA TCACCGAGAT CGACGGCGTG GTCGCCTTCG GCAAGGACGC CAAGGGGAAG
CGCAAGGTCC TGGTCACCCC GGAACTCGGC GAGCCGAAGG AATACTTGAT CCCCAAAGGG
AAGCACATAA GCGTCCACGA AGGGGACCAT GTCCGCGCCG GCGAGGCGCT CATGGACGGC
TCTTCCAATC CGCACGACAT CCTGCGCGTC CTGGGCCAGA AAGAACTGGC CAAGTATCTG
GTCGACGAGG TCCAGGAGGT GTATCGACTC CAGGGCGTCA AGATCAACGA CAAGCACATC
GAGACCATCG TACGTCAGAT GCTGCGCCGC GTCAGGGTCA AGGATGTGGG CGATACCAAT
CTGCTCATCG ACGATCAGAT CGAGCGCTGG GTCTTTGAGG AAGAAAACGA AAAGGCGATG
GACAAAGGCG GGCGTCCTGC AACCGCTGAG TCATTGCTCC TTGGCATAAC CAAGGCGTCG
CTCTCTACTG AGTCATTTAT TTCTGCTGCT TCCTTCCAGG AGACAACAAA AGTATTGACA
CAGGCGTCGA TTGAAGGTAA GATCGATAGT CTTCGCGGTC TCAAAGAGAA CGTGATTATG
GGCCGCTTGA TCCCGGCGGG AACGGGATTG GCTCTTTACC GCAACCTACG CATGGTTGCT
GAGGAGCCAG TAATCATTCC GGAGCCAGTT GAACCGGAAG ATGAAGAAAT CTACGAAGAA
GAAGCCTAG
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| Protein sequence | MEDIFNFFDK PKDPLHFSSI KISISSPDKI RERSFGEVKK PETINYRTFK PERDGLFCAK
IFGPTKDYEC NCGKYKRMKH RGIVCEKCGV EVIPSKVRRE RLGHIDLATP VAHIWFLKSL
PSRIGNLMDI TLKDLEKVLY FEAYVVTDPK ETGLAFGTVF SEDQYQKALE EYSYGFEAGM
GAAAIRTCLT SMDLDQLSEQ LRIEMQEATS EAKRKKTAKR LKVMEAFKNS GNKPEWMILE
CIPVLPPELR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLMELQAPEV IIRNEKRMLQ
EAVDALFDNG RRGRAIAGPN KRPLKSLSDM LKGKSGRFRQ NLLGKRVDYS GRSVIVVGPE
LRLHQCGLPK KMALELFKPF IYNKLEERGF VTTIKSAKKM VEKEKPEVWD VLEEVIKEHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCTAFNAD FDGDQMAVHL PLSVESQVEA
RVLMMSTNNI LSPAHGKPII VPSQDMVLGI YYMTREKHFA LGEGKIFASA DEVNIAWDAG
EIHLQARIKV RMKNLVSDEK PTLIETTTGR VLLRDILPDA VPYATINKVM TKKELSNLVD
VCYRLAGNKE TVILADKLKA IGFRYAAKAG ISISINDMVI PEGKPAIITR ATEEVQEIQN
QYTEGLITDG ERYNKVIDIW AKSTEDIAKE MLDNLSRDTI LDPEGKEVKV PSFNAIHMMA
DSGARGSAQQ IRQLAGMRGL MAKPSGEIIE TPITANFREG LTVLQYFIST HGARKGLADT
ALKTANSGYL TRRLVDVAQD AIITEADCGT IDGLTVSSLT EGGEVIEHIG DRILGRVALD
DILDPVTGDV LVPANEEIDE NLVARIEAAG LEKVKIRSVL TCESRRGICA KCYGRDLARG
HLVNRGEAVG VIAAQSIGEP GTQLTMRTFH IGGTASRRAE QTALEARNEG FAKFININYV
TNSEGHHIVM NRNGELAIVD ETGREREKYG VVYGAKIKVS PQEKVTQGQS VAEWDPYTMP
ILTEIAGRVK FGDVIEGVTM EEQVDEVTGL SRKVIIETRD ADKRPRITIK DESGKTAKIG
DSLLARYYLP VGSNINVLED TEVNAGDVIA KIPRETTKTK DITGGLPRVA ELFEARKPKD
FAVITEIDGV VAFGKDAKGK RKVLVTPELG EPKEYLIPKG KHISVHEGDH VRAGEALMDG
SSNPHDILRV LGQKELAKYL VDEVQEVYRL QGVKINDKHI ETIVRQMLRR VRVKDVGDTN
LLIDDQIERW VFEEENEKAM DKGGRPATAE SLLLGITKAS LSTESFISAA SFQETTKVLT
QASIEGKIDS LRGLKENVIM GRLIPAGTGL ALYRNLRMVA EEPVIIPEPV EPEDEEIYEE
EA
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