Gene GM21_3072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGM21_3072 
Symbol 
ID8138422 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sp. M21 
KingdomBacteria 
Replicon accessionNC_012918 
Strand- 
Start bp3561119 
End bp3562189 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content61% 
IMG OID644870676 
Productdiguanylate cyclase 
Protein accessionYP_003022858 
Protein GI253701669 
COG category[T] Signal transduction mechanisms 
COG ID[COG3605] Signal transduction protein containing GAF and PtsI domains
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.000000000986718 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCCGAGT GTGGTTGCGG TACCCAAAAA GAATCGCTCG AATCGCAGGT TAAGGCGCTC 
AAGGACCTGA TAGAGGTCGC CAAGGCGGTC GTCTCGACGC TCGATCTGGA TACGGTGCTG 
CAGGCTATCC TCAACAGCGC CATGGGATTT GCCGAGACCC CCGCCGGGAG CGTCGCCCTT 
TATTACGACG CCAAGCGTGA GTTGAGCCTG CATGCCCACT CGGGGCTTAC GGCGGACTTC 
GTAAAGAAGG AGCGATGGGA GGTGGCCCCG GGCGGGCTTA CCGAACAGGT GCTTTCTGCG 
GGGGAGATCT TCCTGATCGA GGACACGGAG AAGACCCCGT TCTTCAAGAA CCCGATAGCG 
CTAAACGAAG GTATCCGCTC TCTGGTCTGC GTGCCGCTCA TCTTCCAGTC GCGCATCGTG 
GGGATACTCT ACCTTGACGA CTTCAAGCCG AGGGAGTTCG ACCGGGAGAA GATGAACATG 
CTCTCGATCC TCGCCTCGTT CGCCGCCATG GCGATACACA ACGCGACGCT GCACAAGCGG 
ACCAAGCTCC TGGCGATCAC CGACTCGCTC ACCGGGCTGC ACAACCACCG CTACTTCAAG 
CAGTACTTCA GGCAGGAGAT GGGGCGCGCC AAGCGCTACC ACAAGCCCTT CTCCATCATC 
ATGATGGACG TGGACGACTT CAAGTCCTAC AACGACAGCT TCGGCCACGC CACCGGCGAC 
AGGCTGCTGG CCTTCATGGG CGAGATTATC CTGCAGACCA TCCGCGGCGT GGACGTCGCC 
TTCCGCTACG GCGGGGAAGA ATTCATCGTG CTGCTCCCCG AGACCAAGCT CGACAAGGCT 
ATTCTCGCCG CCGAGCGTCT GCGCGAGAGC GTGCAGGCCG GAACTGCTAA CCGGCCGGTG 
GACGGGTCGG GTCGCGGCGT GACCGTCAGC ATCGGCGTGG CGAGCTACCC CGACAATGCC 
GACAAGATGG ACGAACTCTT CAACATCGTC GATTCTCTCC TTTACCTTGC CAAGCGCTGC 
GGCAAGAACA AGGTATATCA CCAGGAAAGC CTACAGATCC CCGCGCCATG A
 
Protein sequence
MSECGCGTQK ESLESQVKAL KDLIEVAKAV VSTLDLDTVL QAILNSAMGF AETPAGSVAL 
YYDAKRELSL HAHSGLTADF VKKERWEVAP GGLTEQVLSA GEIFLIEDTE KTPFFKNPIA 
LNEGIRSLVC VPLIFQSRIV GILYLDDFKP REFDREKMNM LSILASFAAM AIHNATLHKR 
TKLLAITDSL TGLHNHRYFK QYFRQEMGRA KRYHKPFSII MMDVDDFKSY NDSFGHATGD 
RLLAFMGEII LQTIRGVDVA FRYGGEEFIV LLPETKLDKA ILAAERLRES VQAGTANRPV 
DGSGRGVTVS IGVASYPDNA DKMDELFNIV DSLLYLAKRC GKNKVYHQES LQIPAP