| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_3025 |
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| Symbol | |
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| ID | 8138371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sp. M21 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012918 |
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| Strand | - |
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| Start bp | 3512601 |
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| End bp | 3514541 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644870626 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_003022812 |
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| Protein GI | 253701623 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 134 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTCCA TCCTGGAAGG GATAACTGAA CCGGGGCAGC TGAAGGCGCT TTCGCTGCGG
GAGCTGGAGA CGCTTGCTGG CGAACTCCGC GCGCGGATCA TCGAGACCTG CGCCGCAAAC
GGAGGGCACC TGGCGCCGAG CCTCGGCGTG GTCGAGCTGA CCATAGCCCT GCACCGCGTT
TTCGATTCCC CCAAGGACAA GATCATCTGG GACGTCGGCC ACCAGGCCTA CGCCCATAAG
CTTTTAACCG GCAGGAACGA GCGCTTCGGC ACGCTGCGGA CCCTGGGGGG GATCAGCGGC
TTTCCCAAGC GGGCCGAGTC GCCCCACGAC TGCTTTGACG TCGGGCACTC CTCCACCTCC
ATCTCGGCCG GCGTGGGCTT CGCCGTGGCG CGCGACCTGA AGGGGGAGCA CAACAAGGTA
TTGACCGTGA TAGGCGACGG CTCCATGACC GGCGGCCTGG CGCTAGAGGG GTTGAACCAC
GCGGGAGAGC TGAACAAGGA CCTGGTGGTC ATCCTGAACG ACAACGAGAT GTCCATCTCG
GAGAACGTCG GCGCCCTCTC CAACCTCCTC TCCCGCACCA TAACCAGCGA ATACGTGCAC
CGGGCCAAGA AGGACCTGGA GGCGTTCCTG GAGGGGCTGC CGATGTTCGG CAAGTCGGTC
CTGAAGATCG CCAAGAGGGC CGAGGAGTCG CTGAAGACCC TGTTCACCCC CGGGATGCTC
TTCGAGGCGT TCGGCTTCGA GTACATCGGT CCCATCGACG GGCACGACAT AGAGAAGCTC
GTGGAGACCC TGGAGAACGT GAAGCGCTTC GACGACGCGG TGCTGATCCA TGTCCTCACC
AAGAAGGGGA AGGGGTACCC CGCCGCTGAG GCGAACCCGT CTCTTTTCCA CGGGGTCGGG
CCGTTCGACG CCGCGACCGG GAAGGTGCAC AAGGGCAAAG GTGGTCCCGC CTCCTACACC
GGGGTCTTCG GCGAGACCCT GAAGCGGCTG GCCCAGGACA ACGAGAAGAT CGTGGCCATC
ACCGCCGCCA TGCCCGACGG CACCGGGCTC ACCCCGTTCG CCAAGGAATT TCCGGAGCGG
TTTTTCGACG TGGGGATCGC CGAGCAGCAC GCCGTCACCT TCGCGGCGGG GCTCGCCGCG
GAAGGGTTCC GTCCGGTGGT GGCGCTTTAT TCCTCCTTCC TGCAGCGCGG CTTCGACCAG
CTCTGCCACG ACGTCTGCCT GCAGGAACTC CCGGTCGTCT TCGCCATCGA CCGCGCCGGC
GTGGTCGGCA ACGACGGCCC GACCCACCAT GGCGTCTTCG ACCTCTCATA CCTGCGGCAG
CTTCCCGGGC TCACCGTGAT GGCGCCCAAA GACGAGAACG AGCTGCAGCA CATGCTCTTC
ACCGCCCTCT CGCTCGACGG CCCCTCGGCG GTGCGTTACC CGCGCGGCGC AGGGCTGGGG
GTCCCCATGG ACCAGATCCT GGAGCCGCTT CCGGTAGGGA AGGGGGAGCT GGTCAGGGCG
GGGAAAGACG GCGCCATCCT GGCCGCGGGG ACCATGGTGC ACCCCGCCCA GCAGGCGGCA
GCGGCGCTCG CCCTGGAAGG GGTGGAGCTC GCCGTCATGA ACGTCCGTTT CGTCAAACCC
CTGGACCGCG ACCTGATCCT CTCCCTTGCG GCTACCGGCT TCCTGGTCAC CGTCGAGGAA
AACGTGCTGC AGGGCGGTTT CGGCACCTCC ATCCTGGAAC TATTGGAGGA GTGCGGCGTC
ACCGGCGTCC GGGTGATTCG CCTGGGGTAC CCCGACAGCT TCGTGGAGCA GGGGGAGCAG
GCCGAGCTGA AGGCCGCCTA CGGCCTCGAC GCCGCCGGGA TCATTCGGAG CATCCGCGAG
GCGCGGGGGC GGGCGCAGCA GGAGTTGGTC CTGGAACCGG CGGATCCGTC CGACGGCGCC
GATCTGTCGT GCCGACCATG A
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| Protein sequence | MPSILEGITE PGQLKALSLR ELETLAGELR ARIIETCAAN GGHLAPSLGV VELTIALHRV
FDSPKDKIIW DVGHQAYAHK LLTGRNERFG TLRTLGGISG FPKRAESPHD CFDVGHSSTS
ISAGVGFAVA RDLKGEHNKV LTVIGDGSMT GGLALEGLNH AGELNKDLVV ILNDNEMSIS
ENVGALSNLL SRTITSEYVH RAKKDLEAFL EGLPMFGKSV LKIAKRAEES LKTLFTPGML
FEAFGFEYIG PIDGHDIEKL VETLENVKRF DDAVLIHVLT KKGKGYPAAE ANPSLFHGVG
PFDAATGKVH KGKGGPASYT GVFGETLKRL AQDNEKIVAI TAAMPDGTGL TPFAKEFPER
FFDVGIAEQH AVTFAAGLAA EGFRPVVALY SSFLQRGFDQ LCHDVCLQEL PVVFAIDRAG
VVGNDGPTHH GVFDLSYLRQ LPGLTVMAPK DENELQHMLF TALSLDGPSA VRYPRGAGLG
VPMDQILEPL PVGKGELVRA GKDGAILAAG TMVHPAQQAA AALALEGVEL AVMNVRFVKP
LDRDLILSLA ATGFLVTVEE NVLQGGFGTS ILELLEECGV TGVRVIRLGY PDSFVEQGEQ
AELKAAYGLD AAGIIRSIRE ARGRAQQELV LEPADPSDGA DLSCRP
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